RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SERPINB10P48595 397 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 HPCAP84074 193 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 PAFAH1B3Q15102 231 aaKnown RBP3.48□□□□□ -1.85
CD44-220ENST00000525688 TGIF1Q15583 401 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 Q1RN00 199 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 C15orf32Q32M92 178 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 FAM201AQ5SY85 155 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 AKR1C8PQ5T2L2 129 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 NCBP2-AS2Q69YL0 99 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 C2orf66Q6UXQ4 117 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 SCGB1D4Q6XE38 83 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 GOLT1AQ6ZVE7 132 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 DEFB119Q8N690 84 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 OR4D11Q8NGI4 311 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 OR10G4Q8NGN3 311 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 CCL17Q92583 94 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 TMEM203Q969S6 136 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 PDXPQ96GD0 296 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 GNB1LQ9BYB4 327 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 SRMSQ9H3Y6 488 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 LYRM2Q9NU23 88 aaPredicted RBP3.48□□□□□ -1.85
CD44-220ENST00000525688 SPANXCQ9NY87 97 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 COA4Q9NYJ1 87 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 ZNF629Q9UEG4 869 aaPredicted RBP3.48□□□□□ -1.85
CD44-220ENST00000525688 RSL24D1Q9UHA3 163 aaKnown RBP3.48□□□□□ -1.85
CD44-220ENST00000525688 SIGLEC7Q9Y286 467 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 UGT2A1Q9Y4X1 527 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 CNOT1A5YKK6 2376 aaKnown RBP3.48□□□□□ -1.85
CD44-220ENST00000525688 SPTBN2O15020 2390 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 AKAP13Q12802 2813 aa3.48□□□□□ -1.85
CD44-220ENST00000525688 NYNRINQ9P2P1 1898 aaKnown RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 PI4KAP42356 2102 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 PCDH15Q96QU1 1955 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CEP192Q8TEP8 1941 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 A0A087WX48 190 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 A0A0J9YXV3 536 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 C9orf170A2RU37 121 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 FAM25AB3EWG3 89 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 FAM25CB3EWG5 89 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 FAM25GB3EWG6 89 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 G3V2T6 193 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 UPK2O00526 184 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 TPST1O60507 370 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 DUSP14O95147 198 aaKnown RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 GADD45GO95257 159 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CA2P00918 260 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 OR8U8P0C7N1 319 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 KDELR1P24390 212 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CDK2P24941 298 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 FMO3P31513 532 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 PHBP35232 272 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CD200P41217 278 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 PSMB2P49721 201 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 SLC25A1P53007 311 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 ELF3P78545 371 aaPredicted RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 CXCL6P80162 114 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 TMEM236Q5W0B7 351 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 ZFAND6Q6FIF0 208 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CLEC19AQ6UXS0 136 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 FAM24BQ8N5W8 94 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 DEFB125Q8N687 156 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 OR11H6Q8NGC7 330 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 OR11H7Q8NGC8 314 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 APOBEC3DQ96AK3 386 aaPredicted RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 SLC35G5Q96KT7 338 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CAPZA3Q96KX2 299 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 RNF157Q96PX1 679 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 PRSS27Q9BQR3 290 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 HSPB9Q9BQS6 159 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 C19orf24Q9BVV8 132 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 SLC25A31Q9H0C2 315 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 RNASE7Q9H1E1 156 aaKnown RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 HES4Q9HCC6 221 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 RBFOX1Q9NWB1 397 aaKnown RBP3.47□□□□□ -1.85
CD44-220ENST00000525688 MED29Q9NX70 200 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 HDGFL3Q9Y3E1 203 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CHD8Q9HCK8 2581 aa3.47□□□□□ -1.85
CD44-220ENST00000525688 CABIN1Q9Y6J0 2220 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 PLAC8L1A1L4L8 177 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 TRAPPC13A5PLN9 417 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 PGPA6NDG6 321 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 CCDC160A6NGH7 325 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 DEGS1O15121 323 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 PSPHP1O15172 72 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 CHST10O43529 356 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 DHRS3O75911 302 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 CDRT1O95170 752 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 TRBV12-3P01733 135 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 IGHMP01871 453 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 HBZP02008 142 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 CSF3P09919 207 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 SPI1P17947 270 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 TALDO1P37837 337 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 HSPA9P38646 679 aaKnown RBP3.46□□□□□ -1.86
CD44-220ENST00000525688 DAD1P61803 113 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 GNG5P63218 68 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 KRTAP1-1Q07627 177 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 TIMM50Q3ZCQ8 353 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 Q499Y3 187 aa3.46□□□□□ -1.86
CD44-220ENST00000525688 SLC25A30Q5SVS4 291 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms