RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ZNF14P17017 642 aaPredicted RBP4.86□□□□□ -1.63
LSM1-202ENST00000520286 RAP1AP62834 184 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 HBA1P69905 142 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 TSPAN31Q12999 210 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 SKP2Q13309 424 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 FAM27D1Q5T7N8 215 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 NDUFAF7Q7L592 441 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 GID4Q8IVV7 300 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 TMEM86AQ8N2M4 240 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 OR5D16Q8NGK9 328 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 OR8U1Q8NH10 309 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 PIGXQ8TBF5 258 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 LGALS14Q8TCE9 139 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 RPS4Y2Q8TD47 263 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 ZNF799Q96GE5 643 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 SMIM8Q96KF7 97 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 ANAPC11Q9NYG5 84 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 VPS29Q9UBQ0 182 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 CACFD1Q9UGQ2 172 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 ZNF337Q9Y3M9 751 aa4.86□□□□□ -1.63
LSM1-202ENST00000520286 TMEM72A0PK05 275 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 SEC14L6B5MCN3 397 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ANGPTL7O43827 346 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 SLC16A7O60669 478 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 SLC25A14O95258 325 aaPredicted RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 CTSLP07711 333 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 LINC00614P0C842 121 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 DNAH10OSP0CZ25 163 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 MPC1LP0DKB6 136 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ZNF7P17097 686 aaPredicted RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 TCN2P20062 427 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 MDKP21741 143 aaPredicted RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 FAUP35544 74 aaKnown RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 RBM34P42696 430 aaKnown RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 PPICP45877 212 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 AKR1C2P52895 323 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 LSM6P62312 80 aaKnown RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 AKR1C1Q04828 323 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 SSBP1Q04837 148 aaKnown RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 SLAQ13239 276 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ZNF235Q14590 738 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ZNF658BQ4V348 819 aaPredicted RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 OR10K2Q6IF99 312 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 CD300LGQ6UXG3 332 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ACBD7Q8N6N7 88 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 OR5W2Q8NH69 310 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 OR8D1Q8WZ84 308 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 NEURL3Q96EH8 262 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 OR2A5Q96R48 311 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 ZNF471Q9BX82 626 aaPredicted RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 TREM1Q9NP99 234 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 CYTL1Q9NRR1 136 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 WSB1Q9Y6I7 421 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 CCDC88CQ9P219 2028 aa4.85□□□□□ -1.63
LSM1-202ENST00000520286 DSPP15924 2871 aaKnown RBP4.85□□□□□ -1.63
LSM1-202ENST00000520286 DMXL2Q8TDJ6 3036 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 IGSF10Q6WRI0 2623 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 A0A087WUJ7 227 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 IGHV3OR16-9A0A0B4J2B5 98 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 A0A0J9YXV3 536 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 TSTD3H0UI37 97 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RNASEK-C17orf49H0YIS7 233 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 CTNSO60931 367 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 ARL6IP5O75915 188 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 GLSO94925 669 aaPredicted RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 EPPINO95925 133 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 IFNA17P01571 189 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 IGLV3-27P01718 113 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 C8GP07360 202 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 SFTA3P0C7M3 94 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 TLX1NBP0CAT3 122 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RD3LP0DJH9 198 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 TPT1P13693 172 aaKnown RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 S100A2P29034 98 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 OMPP47874 163 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 SYNJ2BPP57105 145 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RPS11P62280 158 aaKnown RBP eCLIP4.84□□□□□ -1.63
LSM1-202ENST00000520286 TNFRSF9Q07011 255 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 BIKQ13323 160 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 ACSM3Q53FZ2 586 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RNASE10Q5GAN6 216 aaKnown RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 PTRHD1Q6GMV3 140 aaKnown RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 FAM71E1Q6IPT2 247 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 HEPN1Q6WQI6 88 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 SPNS3Q6ZMD2 512 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 DPPA2Q7Z7J5 298 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 MRPL52Q86TS9 123 aaKnown RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 COMTD1Q86VU5 262 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RBM45Q8IUH3 476 aaKnown RBP4.84□□□□□ -1.63
LSM1-202ENST00000520286 WDR31Q8NA23 367 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 OR4C16Q8NGL9 310 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 PIFOQ8TCI5 191 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 PPCDCQ96CD2 204 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 S100A13Q99584 98 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 WFDC6Q9BQY6 131 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 OR51I1Q9H343 314 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 RHOFQ9HBH0 211 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 TAS2R8Q9NYW2 309 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 HDGFL3Q9Y3E1 203 aa4.84□□□□□ -1.63
LSM1-202ENST00000520286 ITPR1Q14643 2758 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms