RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 OR2D3Q8NGH3 330 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 OR1L8Q8NGR8 309 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PRR7Q8TB68 274 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PLPPR1Q8TBJ4 325 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 HILPDAQ9Y5L2 63 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PTPN13Q12923 2485 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 FGF16O43320 207 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 HOXA6P31267 233 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 OR13A1Q8NGR1 328 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 MS4A5Q9H3V2 200 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 MALRD1Q5VYJ5 2156 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 TMSB15BA0A087X1C1 80 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 REG1AP05451 166 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF137PP52743 207 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 CCL20P78556 96 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 ARL16Q0P5N6 197 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 MMDQ15546 238 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 SAXO1Q8IYX7 474 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 NABP1Q96AH0 204 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 TMEM167BQ9NRX6 74 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 SMPD2O60906 423 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 CXorf1O96002 111 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 FAM222BQ8WU58 562 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 SMIM8Q96KF7 97 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 CLEC5AQ9NY25 188 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 RNF24Q9Y225 148 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 SLC25A17O43808 307 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 OR4A8P0C604 315 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 TNFSF10P50591 281 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 KIAA1644Q3SXP7 199 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 VN1R17PQ8TDU5 208 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 TMUB1Q9BVT8 246 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 LINC00470Q9BZP3 86 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 IGLV3-32A0A0A0MS00 114 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 IGHV1-2P23083 117 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 PYY3Q5JQD4 70 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 QTRT1Q9BXR0 403 aaKnown RBP9.9□□□□□ -0.82
SYNPO-204ENST00000519664 ASCL3Q9NQ33 180 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 FBLN5Q9UBX5 448 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 TCF19Q9Y242 345 aa9.9□□□□□ -0.82
SYNPO-204ENST00000519664 LOC102724200A0A096LPH7 203 aaPredicted RBP9.9□□□□□ -0.83
SYNPO-204ENST00000519664 CCL1P22362 96 aa9.9□□□□□ -0.83
SYNPO-204ENST00000519664 OR4F17Q8NGA8 305 aa9.9□□□□□ -0.83
SYNPO-204ENST00000519664 PARLQ9H300 379 aa9.9□□□□□ -0.83
SYNPO-204ENST00000519664 AAMDCQ9H7C9 122 aa9.9□□□□□ -0.83
SYNPO-204ENST00000519664 DNAJC4Q9NNZ3 241 aa9.9□□□□□ -0.83
SYNPO-204ENST00000519664 WNK1Q9H4A3 2382 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 PAFAH1B2P68402 229 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 FXYD3Q14802 87 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 FAM162BQ5T6X4 162 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 GGNQ86UU5 652 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 OR1L6Q8NGR2 347 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 J3KRW8 73 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 CCL21O00585 134 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 PDE6DO43924 150 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 ARL14EPLP0DKL9 152 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 CRYGSP22914 178 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 MFAP2P55001 183 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 C1orf185Q5T7R7 199 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 C10orf113Q5VZT2 155 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 MRPL37Q9BZE1 423 aaKnown RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 FOXD3Q9UJU5 478 aaPredicted RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 YLPM1P49750 1951 aaKnown RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 LINC00869P0C866 280 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 HTR1DP28221 377 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 Q0VFX4 171 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 RAB1CQ92928 201 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 PNRC2Q9NPJ4 139 aaKnown RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 PRRC2CQ9Y520 2896 aaKnown RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 GNG7O60262 68 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 LILRA1O75019 489 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 OR2J3O76001 311 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 USF1P22415 310 aaPredicted RBP9.89□□□□□ -0.83
SYNPO-204ENST00000519664 COL8A1P27658 744 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 TMEM45BQ96B21 275 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 ZNF714Q96N38 554 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 NDFIP1Q9BT67 221 aa9.89□□□□□ -0.83
SYNPO-204ENST00000519664 TRAV24A0A0B4J272 114 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 IGHV3-35A0A0C4DH35 117 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 RRHO14718 337 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 CD99P14209 185 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 CTSSP25774 331 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 S100A7P31151 101 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 FAM216BQ8N7L0 139 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 C9orf106Q8NAJ2 232 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 CHRDL1Q9BU40 450 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 WFDC1Q9HC57 220 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 TNFRSF19Q9NS68 423 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 NCOA6Q14686 2063 aaPredicted RBP9.88□□□□□ -0.83
SYNPO-204ENST00000519664 TFF3Q07654 80 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 WDR61Q9GZS3 305 aaKnown RBP9.88□□□□□ -0.83
SYNPO-204ENST00000519664 MED13Q9UHV7 2174 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 CEACAM18A8MTB9 384 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 RAMP3O60896 148 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 HIST3H3Q16695 136 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 HLA-DRB5Q30154 266 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 OR8I2Q8N0Y5 310 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 BEND2Q8NDZ0 799 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 OR4B1Q8NGF8 309 aa9.88□□□□□ -0.83
SYNPO-204ENST00000519664 EAF1Q96JC9 268 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms