RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 ZNF883P0CG24 379 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 MUC21Q5SSG8 566 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 SAMD13Q5VXD3 122 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TBL2Q9Y4P3 447 aaKnown RBP11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TRBV7-9A0A0J9YWB2 115 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 H3BRM9 83 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 LEPROTL1O95214 131 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 CNTFRP26992 372 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FOXB2Q5VYV0 432 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 WDR82Q6UXN9 313 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TAF15Q92804 592 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL6A3-212ENST00000491769 SLC25A28Q96A46 364 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 FAM131CQ96AQ9 280 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 SPSB2Q99619 263 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 WNT10AQ9GZT5 417 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 NPIPB4C9JG80 1138 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 ZNF688P0C7X2 276 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 MYOD1P15172 320 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 C10orf111Q8N326 155 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM252Q8N6L7 170 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 OR5P3Q8WZ94 311 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 SMCHD1A6NHR9 2005 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 NPIPB8E9PQR5 432 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 NPIPB9F8W1W9 429 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 NPIPB7O75200 414 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 THBDP07204 575 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 SRSF7Q16629 238 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TEX45Q8NA69 505 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 AMELYQ99218 206 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 TMEM160Q9NX00 188 aa11.16□□□□□ -0.62
COL6A3-212ENST00000491769 CXCL3P19876 107 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 CBLN2Q8IUK8 224 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 NABP2Q9BQ15 211 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RPRMQ9NS64 109 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 COL22A1Q8NFW1 1626 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 TRAV40A0A0B4J280 105 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 TSPAN13O95857 204 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 SAA1P0DJI8 122 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RIPPLY2Q5TAB7 128 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 ACP7Q6ZNF0 438 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 LTBP4Q8N2S1 1624 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 CYP2G1PQ6ZSU1 146 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 DTX2Q86UW9 622 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 SAXO1Q8IYX7 474 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 IGHV2OR16-5A0A0B4J2B6 119 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RBMY1BA6NDE4 496 aaKnown RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RBMY1EA6NEQ0 496 aaKnown RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RBMY1DP0C7P1 496 aaKnown RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RBMY1A1P0DJD3 496 aaKnown RBP11.15□□□□□ -0.62
COL6A3-212ENST00000491769 RBMY1CP0DJD4 496 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 GNLYP22749 145 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 SAPCD1Q5SSQ6 148 aa11.15□□□□□ -0.62
COL6A3-212ENST00000491769 A0A087X0M5 115 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 A0A1B0GX30 115 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 FABP2P12104 132 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 OR5AN1Q8NGI8 311 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 NRIP2Q9BQI9 281 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 HSPB9Q9BQS6 159 aa11.15□□□□□ -0.63
COL6A3-212ENST00000491769 OR5AC2Q9NZP5 309 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 CASP8AP2Q9UKL3 1982 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 ERASQ7Z444 233 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 TMEM54Q969K7 222 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 SELENOKQ9Y6D0 94 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 A0A1W2PR77 199 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 CD24P25063 80 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 FAM71F2Q6NXP2 309 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 DRAM1Q8N682 238 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 MRPL32Q9BYC8 188 aaKnown RBP11.14□□□□□ -0.63
COL6A3-212ENST00000491769 LYNX1G3V0Z9 82 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 LYNX1P0DP58 116 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 ZNF385CQ66K41 422 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-212ENST00000491769 ASCL4Q6XD76 172 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 KCNE5Q9UJ90 142 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 ASXL3Q9C0F0 2248 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 CFHR1Q03591 330 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 BEND2Q8NDZ0 799 aa11.14□□□□□ -0.63
COL6A3-212ENST00000491769 SPATA45Q537H7 98 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 TUBD1Q9UJT1 453 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 SLC25A20O43772 301 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 C12orf54Q6X4T0 127 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 C9orf106Q8NAJ2 232 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 OR10AG1Q8NH19 301 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 WFDC12Q8WWY7 111 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 MRPL18Q9H0U6 180 aaKnown RBP11.13□□□□□ -0.63
COL6A3-212ENST00000491769 APC2O95996 2303 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 SCN1AP35498 2009 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 LAMA4Q16363 1823 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 C7orf66A4D0T2 115 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 CD7P09564 240 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 FSTP19883 344 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 ERVK11-1P61568 191 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 PARLQ9H300 379 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 RRHO14718 337 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 SRD5A1P18405 259 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 CYB5R2Q6BCY4 276 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 VAX1Q5SQQ9 334 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 ZNF818PQ6ZRF7 136 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 G6PC2Q9NQR9 355 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 IGLV1-36A0A0B4J1U3 117 aa11.13□□□□□ -0.63
COL6A3-212ENST00000491769 A0A0G2JMM0 328 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms