RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 FAM78BQ5VT40 261 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 AADACL3Q5VUY0 350 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM42Q69YG0 159 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FAM71E1Q6IPT2 247 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 RHBDD2Q6NTF9 364 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FBXW12Q6X9E4 464 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HACD2Q6Y1H2 254 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 Q6ZN92 141 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TSEN54Q7Z6J9 526 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM179BQ7Z7N9 219 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OAFQ86UD1 273 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF429Q86V71 674 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GKN2Q86XP6 184 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM123Q8N131 208 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TCTEX1D1Q8N7M0 179 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 LRRC75AQ8NAA5 344 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 NECAP1Q8NC96 275 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 CHST4Q8NCG5 386 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PLPP5Q8NEB5 264 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC30A7Q8NEW0 376 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 B3GNT7Q8NFL0 401 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR8G5Q8NG78 346 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR4D9Q8NGE8 314 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR52E4Q8NGH9 312 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR51G2Q8NGK0 314 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR52I1Q8NGK6 324 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR5D16Q8NGK9 328 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR2Y1Q8NGV0 311 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR13G1Q8NGZ3 307 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR4L1Q8NH43 312 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR56B4Q8NH76 319 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 BLNKQ8WV28 456 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ITLN2Q8WWU7 325 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ASB13Q8WXK3 278 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ST8SIA1Q92185 356 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DCUN1D4Q92564 292 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 LHX4Q969G2 390 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A46Q96AG3 418 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MUCL1Q96DR8 90 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TM4SF19Q96DZ7 209 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 WDR34Q96EX3 536 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SDSLQ96GA7 329 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 VSTM2LQ96N03 204 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GPR82Q96P67 336 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR2A7Q96R45 310 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 COPS8Q99627 209 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MGLLQ99685 303 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FAM173AQ9BQD7 235 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 NDFIP1Q9BT67 221 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 RSG1Q9BU20 258 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DERL1Q9BUN8 251 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 VAMP8Q9BV40 100 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 FAIM2Q9BWQ8 316 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF471Q9BX82 626 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MAP1LC3CQ9BXW4 147 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PECRQ9BY49 303 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SMIM3Q9BZL3 60 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ATG10Q9H0Y0 220 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SIRPDQ9H106 197 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ATG5Q9H1Y0 275 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 SYT4Q9H2B2 425 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR51I2Q9H344 312 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TCEAL2Q9H3H9 227 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PRSS16Q9NQE7 514 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 LYRM2Q9NU23 88 aaPredicted RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM100Q9NV29 134 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DMAC2Q9NW81 257 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GPATCH2LQ9NWQ4 482 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF586Q9NXT0 402 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ANAPC11Q9NYG5 84 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MRPL27Q9P0M9 148 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DPM3Q9P2X0 92 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 Q9UF83 564 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 VAX2Q9UIW0 290 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 ERG28Q9UKR5 140 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 BTRCQ9Y297 605 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 LAMTOR2Q9Y2Q5 125 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 AK6Q9Y3D8 172 aaKnown RBP1.56□□□□□ -2.16
HMGB1-208ENST00000490788 OR51B2Q9Y5P1 312 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 GON4LQ3T8J9 2241 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 MYH1P12882 1939 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 DLG5Q8TDM6 1919 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 PCM1Q15154 2024 aa1.56□□□□□ -2.16
HMGB1-208ENST00000490788 HIVEP2P31629 2446 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF106Q9H2Y7 1883 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 A0A087WX48 190 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 IGHV1-69-2A0A0G2JMI3 117 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0G2JMM0 328 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0U1RRA0 63 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 A0A1W2PPB8 328 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 GGT3PA6NGU5 568 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR51F1A6NGY5 319 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR2T8A6NH00 312 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 A6NIN4 97 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 KIR3DP1A8MWS1 328 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 UMAD1C9J7I0 102 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 E7EQ34 232 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PPP5D1E7EU14 171 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 C11orf98E9PRG8 122 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms