RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MRPL27Q9P0M9 148 aaKnown RBP2.46□□□□□ -2.02
UPF3B-203ENST00000478840 CCL26Q9Y258 94 aa2.46□□□□□ -2.02
UPF3B-203ENST00000478840 LTBP2Q14767 1821 aa2.46□□□□□ -2.02
UPF3B-203ENST00000478840 NYNRINQ9P2P1 1898 aaKnown RBP2.45□□□□□ -2.02
UPF3B-203ENST00000478840 ITGB4P16144 1822 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 NUP160Q12769 1436 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 WRNQ14191 1432 aaPredicted RBP eCLIP2.45□□□□□ -2.02
UPF3B-203ENST00000478840 A0A087WUJ7 227 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 MDFIC2A0A1B0GVS7 189 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 A0A1W2PQD3 144 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 VPS37CA5D8V6 355 aaPredicted RBP2.45□□□□□ -2.02
UPF3B-203ENST00000478840 GNRH2O43555 120 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 TTRP02766 147 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF728P0DKX0 622 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 HSD11B1P28845 292 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 FXYD7P58549 80 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 FOXF1Q12946 379 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF767PQ75MW2 155 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 DCUN1D1Q96GG9 259 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 IL20Q9NYY1 176 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 RSL24D1Q9UHA3 163 aaKnown RBP2.45□□□□□ -2.02
UPF3B-203ENST00000478840 MMACHCQ9Y4U1 282 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 SLIT2O94813 1529 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 SIPA1L1O43166 1804 aa2.45□□□□□ -2.02
UPF3B-203ENST00000478840 SDK2Q58EX2 2172 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 MYO16Q9Y6X6 1858 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 KCNE1P15382 129 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 SNRPD2P62316 118 aaKnown RBP2.44□□□□□ -2.02
UPF3B-203ENST00000478840 GUK1Q16774 197 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 TMEM97Q5BJF2 176 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 GLT8D1Q68CQ7 371 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF675Q8TD23 568 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 PPP1R2P1Q96PQ5 205 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 DCSTAMPQ9H295 470 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 GLTPQ9NZD2 209 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 FBXO5Q9UKT4 447 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 MTUS2Q5JR59 1369 aa2.44□□□□□ -2.02
UPF3B-203ENST00000478840 MUC21A0A0G2JKD1 596 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 MUC21A0A140T8X8 626 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 SDHAF1A6NFY7 115 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 C11orf86A6NJI1 115 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 KNCNA6PVL3 124 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 NSA2O95478 260 aaKnown RBP2.43□□□□□ -2.02
UPF3B-203ENST00000478840 SRP19P09132 144 aaKnown RBP2.43□□□□□ -2.02
UPF3B-203ENST00000478840 UCHL1P09936 223 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 CAPZBP47756 277 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 HIST1H3AP68431 136 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 MRPS25P82663 173 aaKnown RBP2.43□□□□□ -2.02
UPF3B-203ENST00000478840 H3F3AP84243 136 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 MIAQ16674 131 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 LPCAT3Q6P1A2 487 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 SSX8Q7RTT4 187 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 TTTY13Q9BZ97 58 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 CMTM6Q9NX76 183 aa2.43□□□□□ -2.02
UPF3B-203ENST00000478840 SLX4Q8IY92 1834 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 PLXNB1O43157 2135 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF407Q9C0G0 2248 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 TRGV5A0A0B4J1U4 118 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF189O75820 626 aaPredicted RBP2.42□□□□□ -2.02
UPF3B-203ENST00000478840 RPL30P62888 115 aaKnown RBP2.42□□□□□ -2.02
UPF3B-203ENST00000478840 AKR1C1Q04828 323 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 PP632Q6XCG6 107 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 ZNF283Q8N7M2 679 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 FGF13Q92913 245 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 BORCS7Q96B45 105 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 PAIP2Q9BPZ3 127 aaKnown RBP2.42□□□□□ -2.02
UPF3B-203ENST00000478840 Q9BRP9 147 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 PKIGQ9Y2B9 76 aa2.42□□□□□ -2.02
UPF3B-203ENST00000478840 NUP155O75694 1391 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 HLA-DRB1P01911 266 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 CCL5P13501 91 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 GZMHP20718 246 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 ALDH3A1P30838 453 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 RPL5P46777 297 aaKnown RBP2.41□□□□□ -2.02
UPF3B-203ENST00000478840 RAB13P51153 203 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 ARF6P62330 175 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 SPA17Q15506 151 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 IAH1Q2TAA2 248 aaPredicted RBP2.41□□□□□ -2.02
UPF3B-203ENST00000478840 Q6ZS49 121 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 KRTAP5-5Q701N2 237 aaPredicted RBP2.41□□□□□ -2.02
UPF3B-203ENST00000478840 TBC1D19Q8N5T2 526 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 KLK6Q92876 244 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 ERMAPQ96PL5 475 aaPredicted RBP2.41□□□□□ -2.02
UPF3B-203ENST00000478840 TSPAN32Q96QS1 320 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 PRTFDC1Q9NRG1 225 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 CCDC144AA2RUR9 1427 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 DOCK6Q96HP0 2047 aa2.41□□□□□ -2.02
UPF3B-203ENST00000478840 A0A0J9YY10 115 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 A0A1B0GX78 115 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 C2orf74A8MZ97 194 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 C3orf84H3BNL1 204 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 TXNDC9O14530 226 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 CNIH1O95406 144 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 ZNF705DP0CH99 300 aaPredicted RBP2.4□□□□□ -2.03
UPF3B-203ENST00000478840 CA5AP35218 305 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 AP1S1P61966 158 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 BASP1P80723 227 aaKnown RBP2.4□□□□□ -2.03
UPF3B-203ENST00000478840 SS18Q15532 418 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 GRK1Q15835 563 aa2.4□□□□□ -2.03
UPF3B-203ENST00000478840 LHFPL1Q86WI0 220 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms