RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 SPACA4Q8TDM5 124 aa2.31□□□□□ -2.04
VPS50-212ENST00000476413 MRPS24Q96EL2 167 aaKnown RBP2.31□□□□□ -2.04
VPS50-212ENST00000476413 HHLA3Q9XRX5 114 aa2.31□□□□□ -2.04
VPS50-212ENST00000476413 TRIOBPQ9H2D6 2365 aa2.31□□□□□ -2.04
VPS50-212ENST00000476413 IGLV3-9A0A075B6K5 115 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 NSA2O95478 260 aaKnown RBP2.3□□□□□ -2.04
VPS50-212ENST00000476413 UCHL3P15374 230 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 RPL30P62888 115 aaKnown RBP2.3□□□□□ -2.04
VPS50-212ENST00000476413 ZNF791Q3KP31 576 aaPredicted RBP2.3□□□□□ -2.04
VPS50-212ENST00000476413 PABPC1L2AQ5JQF8 200 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 FAM201AQ5SY85 155 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 OR51D1Q8NGF3 324 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 OR51T1Q8NGJ9 327 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 OR5J2Q8NH18 312 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 KLF6Q99612 283 aaPredicted RBP2.3□□□□□ -2.04
VPS50-212ENST00000476413 TIMM21Q9BVV7 248 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 MRPS26Q9BYN8 205 aaKnown RBP2.3□□□□□ -2.04
VPS50-212ENST00000476413 UBAP1Q9NZ09 502 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 AK3Q9UIJ7 227 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 MYO3BQ8WXR4 1341 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 RTEL1-TNFRSF6BF6WH68 1400 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 SNAPC4Q5SXM2 1469 aa2.3□□□□□ -2.04
VPS50-212ENST00000476413 PXDNLA1KZ92 1463 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 TGIF2-C20orf24A0A0A6YYL0 155 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 TMEM269A0A1B0GVZ9 245 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 ARRDC5A6NEK1 342 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 IFI30P13284 250 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 ALDH3A1P30838 453 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 CA5AP35218 305 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 HINT1P49773 126 aaPredicted RBP2.29□□□□□ -2.04
VPS50-212ENST00000476413 ITGB3BPQ13352 177 aaPredicted RBP2.29□□□□□ -2.04
VPS50-212ENST00000476413 OR2F1Q13607 317 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 SYPL2Q5VXT5 272 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 C8orf74Q6P047 294 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 Q6ZTI0 123 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 SLC35E3Q7Z769 313 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 C1orf158Q8N1D5 194 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 OR1L8Q8NGR8 309 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 DCANP1Q8TF63 244 aa2.29□□□□□ -2.04
VPS50-212ENST00000476413 SAMHD1Q9Y3Z3 626 aaKnown RBP2.29□□□□□ -2.04
VPS50-212ENST00000476413 CPAMD8Q8IZJ3 1885 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 PLB1Q6P1J6 1458 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 NUP160Q12769 1436 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 MALRD1Q5VYJ5 2156 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 TMSB15BA0A087X1C1 80 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 TRAV41A0A0B4J266 112 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 RFPL4AA6NLU0 287 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 RFPL4AL1F8VTS6 287 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 KCNK1O00180 336 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 TFPTP0C1Z6 253 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 FABP9Q0Z7S8 132 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 PMAIP1Q13794 54 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 SSX8Q7RTT4 187 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 SLC35B4Q969S0 331 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 IMMP2LQ96T52 175 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 AMMECR1Q9Y4X0 333 aaPredicted RBP2.28□□□□□ -2.04
VPS50-212ENST00000476413 MDC1Q14676 2089 aaKnown RBP2.28□□□□□ -2.04
VPS50-212ENST00000476413 PTPRBP23467 1997 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 RALGAPA2Q2PPJ7 1873 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 ITGB4P16144 1822 aa2.28□□□□□ -2.04
VPS50-212ENST00000476413 DCCP43146 1447 aa2.27□□□□□ -2.05
VPS50-212ENST00000476413 ZNF532Q9HCE3 1301 aa2.27□□□□□ -2.05
VPS50-212ENST00000476413 ZNF705FA8MVS1 300 aaPredicted RBP2.27□□□□□ -2.05
VPS50-212ENST00000476413 M0R036 132 aa2.27□□□□□ -2.05
VPS50-212ENST00000476413 HIST3H3Q16695 136 aa2.27□□□□□ -2.05
VPS50-212ENST00000476413 ANGPT4Q9Y264 503 aa2.27□□□□□ -2.05
VPS50-212ENST00000476413 LSM5Q9Y4Y9 91 aaKnown RBP2.27□□□□□ -2.05
VPS50-212ENST00000476413 MAST2Q6P0Q8 1798 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 A0A0J9YW62 118 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 J3QKU1 62 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 J3QQQ9 107 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 IGKV1-16P04430 117 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 SERPINA6P08185 405 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 OR5G3P0C626 314 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 FAM228BP0C875 321 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 FGF6P10767 208 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 IDH3GP51553 393 aaPredicted RBP2.26□□□□□ -2.05
VPS50-212ENST00000476413 RPL26P61254 145 aaKnown RBP2.26□□□□□ -2.05
VPS50-212ENST00000476413 DCXRQ7Z4W1 244 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 VCX3BQ9H321 246 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 RPL26L1Q9UNX3 145 aaKnown RBP2.26□□□□□ -2.05
VPS50-212ENST00000476413 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
VPS50-212ENST00000476413 DENND4BO75064 1496 aaPredicted RBP2.26□□□□□ -2.05
VPS50-212ENST00000476413 GREB1Q4ZG55 1949 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 IGHV3-64A0A075B6Q5 118 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 A0A1B0GVG6 124 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 EEF1E1-BLOC1S5C9J1V9 151 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 IFNA16P05015 189 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 RPL28P46779 137 aaKnown RBP2.25□□□□□ -2.05
VPS50-212ENST00000476413 POLR2GP62487 172 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS50-212ENST00000476413 IFITM2Q01629 132 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 CCDC122Q5T0U0 273 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 LYZL1Q6UWQ5 148 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 KLK6Q92876 244 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 CNBD2Q96M20 576 aa2.25□□□□□ -2.05
VPS50-212ENST00000476413 KIAA2026Q5HYC2 2103 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 H3BT86 120 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 I3L521 148 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 LEPROTO15243 131 aa2.24□□□□□ -2.05
VPS50-212ENST00000476413 LGALS1P09382 135 aaKnown RBP2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms