RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 RBM48Q5RL73 367 aaKnown RBP13.47□□□□□ -0.25
SHH-205ENST00000472308 VKORC1L1Q8N0U8 176 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 OR10J5Q8NHC4 309 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 PHYHIPQ92561 330 aa13.47□□□□□ -0.25
SHH-205ENST00000472308 URM1Q9BTM9 101 aaKnown RBP13.47□□□□□ -0.25
SHH-205ENST00000472308 IGLV11-55A0A075B6I3 123 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 PRSS29PA6NIE9 313 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 DEFB4AO15263 64 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 GPR183P32249 361 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 RPL27AP46776 148 aaKnown RBP13.46□□□□□ -0.25
SHH-205ENST00000472308 MED21Q13503 144 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 P2RY14Q15391 338 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 MED22Q15528 200 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 ZNF124Q15973 351 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 ACSM3Q53FZ2 586 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 APRG1Q8IVJ8 170 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 OR6M1Q8NGM8 313 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 C9orf16Q9BUW7 83 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 ZNF436Q9C0F3 470 aaPredicted RBP13.46□□□□□ -0.25
SHH-205ENST00000472308 UFC1Q9Y3C8 167 aa13.46□□□□□ -0.25
SHH-205ENST00000472308 TRBV7-1A0A0A6YYK4 115 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 DPPA5A6NC42 116 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 OR11H2Q8NH07 326 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 CD300LFQ8TDQ1 290 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 TMEM190Q8WZ59 177 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 GFI1Q99684 422 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 CSTL1Q9H114 145 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 OR51E2Q9H255 320 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 KCNK7Q9Y2U2 307 aa13.45□□□□□ -0.26
SHH-205ENST00000472308 EFCAB10A6NFE3 127 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 FCGR3BO75015 233 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 CIB2O75838 187 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 KBTBD11O94819 623 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 DIRAS3O95661 229 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 REG1AP05451 166 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 FCGR3AP08637 254 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 MYOD1P15172 320 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 ST3GAL4Q11206 333 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 OR2B11Q5JQS5 317 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 ZNF502Q8TBZ5 544 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 MAFIPQ8WZ33 124 aa13.44□□□□□ -0.26
SHH-205ENST00000472308 RBM7Q9Y580 266 aaKnown RBP13.44□□□□□ -0.26
SHH-205ENST00000472308 LRP1BQ9NZR2 4599 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 OR4C46A6NHA9 309 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 CGB1A6NKQ9 187 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 MPTX1A8MV57 137 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 WNT4P56705 351 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 RPL30P62888 115 aaKnown RBP13.43□□□□□ -0.26
SHH-205ENST00000472308 PUSL1Q8N0Z8 303 aaKnown RBP13.43□□□□□ -0.26
SHH-205ENST00000472308 TMEM167AQ8TBQ9 72 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 CXorf58Q96LI9 332 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 DCUN1D5Q9BTE7 237 aa13.43□□□□□ -0.26
SHH-205ENST00000472308 DHFRP00374 187 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 CDK1P06493 297 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 RPA2P15927 270 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 HIST1H1BP16401 226 aaKnown RBP13.42□□□□□ -0.26
SHH-205ENST00000472308 RASSF2P50749 326 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 ARFRP1Q13795 201 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 H1FOOQ8IZA3 346 aaPredicted RBP13.42□□□□□ -0.26
SHH-205ENST00000472308 OR2A7Q96R45 310 aa13.42□□□□□ -0.26
SHH-205ENST00000472308 DAZ1Q9NQZ3 744 aaKnown RBP13.42□□□□□ -0.26
SHH-205ENST00000472308 PLA2G7Q13093 441 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 LAMTOR1Q6IAA8 161 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 ZFP1Q6P2D0 407 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 PLET1Q6UQ28 207 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 KCTD9Q7L273 389 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 GINS4Q9BRT9 223 aa13.41□□□□□ -0.26
SHH-205ENST00000472308 C11orf94C9JXX5 98 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 SLC17A2O00624 439 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 IGLV2-14P01704 120 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 CTSDP07339 412 aaPredicted RBP13.4□□□□□ -0.26
SHH-205ENST00000472308 DEFA4P12838 97 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 MAS1LP35410 378 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 BRWD1-AS2P59051 145 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 HSD17B12Q53GQ0 312 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 ZNF575Q86XF7 245 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 ZNF555Q8NEP9 628 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 OR56B1Q8NGI3 324 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 C6orf62Q9GZU0 229 aaPredicted RBP13.4□□□□□ -0.26
SHH-205ENST00000472308 PLA2G2EQ9NZK7 142 aa13.4□□□□□ -0.26
SHH-205ENST00000472308 IGHV4-4A0A075B6R2 117 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 IGKV1D-8A0A087WSZ0 117 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 MYL12BO14950 172 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 TGOLN2O43493 480 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 UCHL1P09936 223 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 ADMP35318 185 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 PSMD7P51665 324 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 CLDN12P56749 244 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 IRF3Q14653 427 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 SSX9Q7RTT3 188 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 MS4A15Q8N5U1 240 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 ZNF645Q8N7E2 425 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 NANOGP1Q8N7R0 232 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 Q8NAQ8 132 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 OR4A5Q8NH83 315 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 VSTM2AQ8TAG5 236 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 HRH4Q9H3N8 390 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 PLGRKTQ9HBL7 147 aa13.39□□□□□ -0.27
SHH-205ENST00000472308 SMPD3Q9NY59 655 aaPredicted RBP13.39□□□□□ -0.27
SHH-205ENST00000472308 IGHV3OR16-8A0A075B7F1 116 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms