RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PATE1Q8WXA2 126 aa11.49□□□□□ -0.57
COL6A3-209ENST00000472056 ELOVL5Q9NYP7 299 aa11.49□□□□□ -0.57
COL6A3-209ENST00000472056 ZNF257Q9Y2Q1 563 aa11.49□□□□□ -0.57
COL6A3-209ENST00000472056 KBTBD11-OT1A0A1B0GTJ5 212 aa11.49□□□□□ -0.57
COL6A3-209ENST00000472056 RBMY1BA6NDE4 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-209ENST00000472056 RBMY1EA6NEQ0 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-209ENST00000472056 F12P00748 615 aaPredicted RBP11.49□□□□□ -0.57
COL6A3-209ENST00000472056 RBMY1DP0C7P1 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-209ENST00000472056 RBMY1A1P0DJD3 496 aaKnown RBP11.49□□□□□ -0.57
COL6A3-209ENST00000472056 RBMY1CP0DJD4 496 aa11.49□□□□□ -0.57
COL6A3-209ENST00000472056 FTH1P19P0C7X4 201 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 KLK2P20151 261 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 SNRPD3P62318 126 aaKnown RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 SRSF4Q08170 494 aaKnown RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 CENPWQ5EE01 88 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 TBR1Q16650 682 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 PLNP26678 52 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 ZNF324BQ6AW86 544 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 G6PC2Q9NQR9 355 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 H0YL77 283 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 LIFP15018 202 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 WIPI1Q5MNZ9 446 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 PHLDA1Q8WV24 401 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 GPR146Q96CH1 333 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 CRISPLD2Q9H0B8 497 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 C7orf71A4D174 169 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 IFITM2Q01629 132 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 OR1K1Q8NGR3 316 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 FGFRL1Q8N441 504 aa11.48□□□□□ -0.57
COL6A3-209ENST00000472056 NXT2Q9NPJ8 142 aaKnown RBP11.48□□□□□ -0.57
COL6A3-209ENST00000472056 PGLYRP4Q96LB8 373 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 CXCL16Q9H2A7 254 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TMEM196Q5HYL7 178 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 VN1R4Q7Z5H5 301 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TSPAN7P41732 249 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 DLK2Q6UY11 383 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TRAV8-2A0A0B4J237 113 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 WISP3O95389 354 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-209ENST00000472056 CKS1BP61024 79 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 MMDQ15546 238 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TMEM95Q3KNT9 176 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 NRN1LQ496H8 165 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 IGHV1OR21-1A0A087WYE8 117 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TSPAN2O60636 221 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 CCL4L1Q8NHW4 92 aa11.47□□□□□ -0.57
COL6A3-209ENST00000472056 TRAV39A0A0B4J263 110 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 PAX1P15863 534 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 Q5PR19 223 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 CBLN3Q6UW01 205 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 KIF26AQ9ULI4 1882 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-209ENST00000472056 TRAV9-2A0A087WT02 112 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 PGPEP1LA6NFU8 196 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 GCSAMLQ5JQS6 135 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 ZNF576Q9H609 170 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 JPT1Q9UK76 154 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 CYSLTR1Q9Y271 337 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 CCL7P80098 99 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 LPAL2Q16609 132 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 SELENOHQ8IZQ5 122 aaKnown RBP11.46□□□□□ -0.57
COL6A3-209ENST00000472056 RNASEH2CQ8TDP1 164 aaKnown RBP11.46□□□□□ -0.57
COL6A3-209ENST00000472056 ORAOV1Q8WV07 137 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 A0A1B0GW64 132 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 FAM90A9PA6NNJ1 464 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 MALRD1Q5VYJ5 2156 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 TMEM170AQ8WVE7 144 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 Q96M66 194 aa11.46□□□□□ -0.57
COL6A3-209ENST00000472056 BEX4Q9NWD9 120 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-209ENST00000472056 IGHV3-64DA0A0J9YX35 117 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 IZUMO1RA6ND01 250 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 TM4SF5O14894 197 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 NANOS3P60323 173 aaKnown RBP11.46□□□□□ -0.58
COL6A3-209ENST00000472056 FBLN7Q53RD9 439 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 PRSS27Q9BQR3 290 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 MBD1Q9UIS9 605 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-209ENST00000472056 F11RQ9Y624 299 aaKnown RBP11.46□□□□□ -0.58
COL6A3-209ENST00000472056 IGHV3-43A0A0B4J1X8 118 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 IGHV3-43DP0DP04 118 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 WNT5AP41221 380 aa11.46□□□□□ -0.58
COL6A3-209ENST00000472056 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-209ENST00000472056 MDP1Q86V88 176 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 DDB2Q92466 427 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 TMEM106BQ9NUM4 274 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 IGHV5-51A0A0C4DH38 117 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 GPR183P32249 361 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 CX3CL1P78423 397 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 FNDC1Q4ZHG4 1894 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-209ENST00000472056 APOMO95445 188 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 SFTPCP11686 197 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 LURAP1LQ8IV03 231 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 RCC1LQ96I51 464 aaKnown RBP11.45□□□□□ -0.58
COL6A3-209ENST00000472056 MPV17P39210 176 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 HDHD3Q9BSH5 251 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-209ENST00000472056 GP6Q9HCN6 339 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 TMEM186Q96B77 213 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 ZNF488Q96MN9 340 aa11.45□□□□□ -0.58
COL6A3-209ENST00000472056 LINC00587B1AMM8 73 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 PGLYRP1O75594 196 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-209ENST00000472056 ERVK11-1P61568 191 aa11.44□□□□□ -0.58
COL6A3-209ENST00000472056 HSD52Q0P140 79 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms