RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TRNP1Q6NT89 227 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 SPSB3Q6PJ21 355 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GOLT1AQ6ZVE7 132 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 KLHDC1Q8N7A1 406 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 OR1L1Q8NH94 360 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM37Q8WXS4 190 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 RASL10AQ92737 203 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CARD19Q96LW7 228 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 IMMP2LQ96T52 175 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 LRRC61Q9BV99 259 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 EDA2RQ9HAV5 297 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 CDH20Q9HBT6 801 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TXNL4BQ9NX01 149 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 KLK13Q9UKR3 277 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 BTRCQ9Y297 605 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 YTHDF2Q9Y5A9 579 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PLXNB3Q9ULL4 1909 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 OR51F1A6NGY5 319 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 C15orf61A6NNL5 157 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 F8VVB4 439 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 F8VWA3 439 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 NME4O00746 187 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GEMIN2O14893 280 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TAPBPO15533 448 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PRB1P04280 392 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GATA1P15976 413 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF708P17019 499 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 IGFBP3P17936 291 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC38A11Q08AI6 406 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 EFEMP1Q12805 493 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TRIP6Q15654 476 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 Q6AWC8 147 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 C1QL2Q7Z5L3 287 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 PIP4P1Q86T03 277 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 LRP11Q86VZ4 500 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC35F2Q8IXU6 374 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 DEFB106AQ8N104 65 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GCSAMQ8N6F7 178 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TCEANCQ8N8B7 351 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ZDHHC22Q8N966 263 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TEX45Q8NA69 505 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF555Q8NEP9 628 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC25A40Q8TBP6 338 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 GMPPAQ96IJ6 420 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TCEAL2Q9H3H9 227 aaPredicted RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM9BQ9NQ34 198 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 EHFQ9NZC4 300 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 Q9UF83 564 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 RARRES3Q9UL19 164 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 IER3IP1Q9Y5U9 82 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 ASCC3Q8N3C0 2202 aaKnown RBP3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 AKAP13Q12802 2813 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 NBEAQ8NFP9 2946 aa3.95□□□□□ -1.78
CCDC88A-209ENST00000456975 MUC22E2RYF6 1773 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TSPAN11A1L157 253 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 K7EP34 96 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 RAMP1O60894 148 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TACSTD2P09758 323 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 GABRG2P18507 467 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SRP14P37108 136 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TPPP2P59282 170 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 DIAPH2-AS1Q14236 149 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 Q5XG85 94 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TNFAIP8L2Q6P589 184 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SBSNQ6UWP8 590 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC25A48Q6ZT89 311 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 DEFB124Q8NES8 71 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 C11orf45Q8TAV5 145 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 MCHR1Q99705 422 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 NIPSNAP3BQ9BS92 247 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SNRNP25Q9BV90 132 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 IFI27L2Q9H2X8 130 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 RBM22Q9NW64 420 aaKnown RBP eCLIP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 KLF12Q9Y4X4 402 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 LINC00312Q9Y6C7 94 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 FLNBO75369 2602 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 WDFY3Q8IZQ1 3526 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 A0A087X0T9 212 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TRGV10A0A0A0MS01 117 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 GGT3PA6NGU5 568 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 K7ENP7 123 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 XKRYO14609 159 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 GRAP2O75791 330 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 MT-ATP8P03928 68 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 FCGR3AP08637 254 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 CISD3P0C7P0 127 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 CTSEP14091 401 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 CD99P14209 185 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 LOXP28300 417 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 PI4KAP42356 2102 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 LCN6P62502 163 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 HOXA4Q00056 320 aaPredicted RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 ATP5G2Q06055 141 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 EIF3IQ13347 325 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 ICAM4Q14773 271 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SLC25A35Q3KQZ1 300 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 SPANXN3Q5MJ09 141 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 LY6G5CQ5SRR4 150 aa3.94□□□□□ -1.78
CCDC88A-209ENST00000456975 TRIM40Q6P9F5 258 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms