RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 NDUFB8O95169 186 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 CCL3P10147 92 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 HNF1AP20823 631 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 KRTDAPP60985 99 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 RNASE8Q8TDE3 154 aaKnown RBP7.16□□□□□ -1.26
HPS4-206ENST00000439453 AP1S3Q96PC3 154 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 TAAR6Q96RI8 345 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 PROK2Q9HC23 129 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 SLC45A2Q9UMX9 530 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 RNF114Q9Y508 228 aa7.16□□□□□ -1.26
HPS4-206ENST00000439453 UTP20O75691 2785 aaKnown RBP7.15□□□□□ -1.26
HPS4-206ENST00000439453 TRBV20OR9-2A0A075B6H5 130 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 C3orf80F5H4A9 247 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 SYNGR4O95473 234 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 TIMP3P35625 211 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 RBX1P62877 108 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 COLCA1Q6ZS62 124 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 LINC00596Q86U02 117 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 SIGLECL1Q8N7X8 197 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 Q8N976 141 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 TIMM8BQ9Y5J9 83 aaPredicted RBP7.15□□□□□ -1.26
HPS4-206ENST00000439453 TRAV34A0A0B4J273 112 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 DIRC3C9JPN6 131 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 CTRLP40313 264 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 THBS3P49746 956 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 RAC3P60763 192 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 Q0VG73 95 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 SPATA45Q537H7 98 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 MCEMP1Q8IX19 187 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 DRAM1Q8N682 238 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 OR1L6Q8NGR2 347 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 UBALD1Q8TB05 177 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 RNF2Q99496 336 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 FAM103A1Q9BTL3 118 aaKnown RBP7.15□□□□□ -1.26
HPS4-206ENST00000439453 CHODLQ9H9P2 273 aa7.15□□□□□ -1.26
HPS4-206ENST00000439453 NBASA2RRP1 2371 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 TRAV9-1A0A075B6T8 112 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 TRAV38-1A0A0B4J264 116 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 A0A0G2JMM0 328 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 A0A1W2PPB8 328 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 A0A1W2PRS3 328 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 ZNF716A6NP11 495 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 KIR3DP1A8MWS1 328 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 CCL25O15444 150 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 OR5G3P0C626 314 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 PLA2G2AP14555 144 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 CCNOP22674 350 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 SUMO1P63165 101 aaKnown RBP7.15□□□□□ -1.27
HPS4-206ENST00000439453 VAMP3Q15836 100 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 VWC2Q2TAL6 325 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 GCSAMLQ5JQS6 135 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 SAPCD1Q5SSQ6 148 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 SPINK14Q6IE38 97 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 ALKBH2Q6NS38 261 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 RPS19BP1Q86WX3 136 aaKnown RBP7.15□□□□□ -1.27
HPS4-206ENST00000439453 C1orf174Q8IYL3 243 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 OCC1Q8TAD7 63 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 DEPPQ9NTK1 212 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 ZNF586Q9NXT0 402 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 IL36BQ9NZH7 164 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 UQCR10Q9UDW1 63 aa7.15□□□□□ -1.27
HPS4-206ENST00000439453 GJE1A6NN92 205 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 FCN1O00602 326 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 ZG16O60844 167 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 TMEM249Q2WGJ8 235 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 LEMD1Q68G75 181 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 MRPL21Q7Z2W9 205 aaKnown RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 ORAOV1Q8WV07 137 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 GAL3ST2Q9H3Q3 398 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 PINLYPA6NC86 204 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 LRRC30A6NM36 301 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 RNF212BA8MTL3 300 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 GPX1P07203 203 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 G6PCP35575 357 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 CARD18P57730 90 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 C22orf15Q8WYQ4 148 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 APOBEC3DQ96AK3 386 aaPredicted RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 GMPPAQ96IJ6 420 aaPredicted RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 QTRT1Q9BXR0 403 aaKnown RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 ZNF703Q9H7S9 590 aaPredicted RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.14□□□□□ -1.27
HPS4-206ENST00000439453 NKX6-3A6NJ46 265 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 DNPH1O43598 174 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 IER3P46695 156 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 HTD2P86397 168 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 KRTCAP3Q53RY4 240 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 FAM58AQ8N1B3 248 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 OR4C5Q8NGB2 326 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 ZDHHC16Q969W1 377 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 LAMTOR2Q9Y2Q5 125 aa7.14□□□□□ -1.27
HPS4-206ENST00000439453 A0A1W2PPV4 95 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 ODAMA1E959 279 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 SLC17A3O00476 420 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 RAMP3O60896 148 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 CCL2P13500 99 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 HNRNPA3P51991 378 aaKnown RBP7.13□□□□□ -1.27
HPS4-206ENST00000439453 KLF3P57682 345 aaPredicted RBP7.13□□□□□ -1.27
HPS4-206ENST00000439453 OR1C1Q15619 314 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 HLA-DRB5Q30154 266 aa7.13□□□□□ -1.27
HPS4-206ENST00000439453 RNFT1Q5M7Z0 435 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms