RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ISG15P05161 165 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 SUCLG1P53597 346 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 MBNL2Q5VZF2 373 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 LSM10Q969L4 123 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 YAE1D1Q9NRH1 226 aa10.33□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A087X0M5 115 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A1B0GX30 115 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 H1FOOQ8IZA3 346 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 C10orf111Q8N326 155 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 FBLL1A6NHQ2 334 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 IL4P05112 153 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 CD69Q07108 199 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 ZNF345Q14585 488 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 WDFY1Q8IWB7 410 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 PIEZO2Q9H5I5 2752 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 LGALS3P17931 250 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 CACNA1AO00555 2505 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 DNASE2BQ8WZ79 361 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 SCARF2Q96GP6 870 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHV3-49A0A0A0MS15 119 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 C2orf88Q9BSF0 95 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 FOXI3A8MTJ6 420 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 GDF9O60383 454 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 CEACAM4O75871 244 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 NDUFB4O95168 129 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 VDAC2P45880 294 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 CCL27Q9Y4X3 112 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 APOBEC3AP31941 199 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 CA2P00918 260 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 HIST1H4GQ99525 98 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 MAP1LC3AQ9H492 121 aa10.32□□□□□ -0.76
CCDC88A-207ENST00000436346 PTPRBP23467 1997 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 TRAV30A0A087WSZ9 112 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 LOC107984156A0A0G2JMH3 177 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 CD81P60033 236 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 ARL17AQ8IVW1 177 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 FOXD3Q9UJU5 478 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 ZNF256Q9Y2P7 627 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 RAI1Q7Z5J4 1906 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 AMY1AP04745 511 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 ERGP11308 486 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 FSTP19883 344 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 RUNX1Q01196 453 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 MEF2BQ02080 365 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 PEAR1Q5VY43 1037 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 CSRP2Q16527 193 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHV3OR16-13A0A075B7E8 117 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHV3-74A0A0B4J1X5 117 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 SERF2P84101 59 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 SLC16A13Q7RTY0 426 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 TNFSF10P50591 281 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 FAM3BP58499 235 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 SUMO2P61956 95 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 TNFRSF9Q07011 255 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 C10orf128Q5T292 105 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 PQLC2Q6ZP29 291 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 TMEM101Q96IK0 257 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 TP53RKQ96S44 253 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 KIR2DL4Q99706 377 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 OR9G1Q8NH87 305 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A0G2JMM0 328 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A1W2PPB8 328 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A1W2PRS3 328 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 KIR3DP1A8MWS1 328 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 H3BTX0 84 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 CTSBP07858 339 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 ATP6V0CP27449 155 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 COMPP49747 757 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 IGHV3-35A0A0C4DH35 117 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 ABHD17AQ96GS6 310 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 DUX3Q96PT4 197 aa10.31□□□□□ -0.76
CCDC88A-207ENST00000436346 LMX1BO60663 402 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 IGKV1D-33P01593 117 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 IGKV1-33P01594 117 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 CD74P04233 296 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 NPPCP23582 126 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 FAM159AQ6UWV7 190 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 ZNRF1Q8ND25 227 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 MRPS16Q9Y3D3 137 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 RPL39P5Q59GN2 51 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 RNASE4P34096 147 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 PET117Q6UWS5 81 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 WNT5BQ9H1J7 359 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 RAB24Q969Q5 203 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 TMEM45BQ96B21 275 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 GPR61Q9BZJ8 451 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 NCMAPQ5T1S8 102 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 C9orf62Q8N4C0 152 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 DNAJC4Q9NNZ3 241 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 PRRC2AP48634 2157 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 A0A1W2PQM1 296 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 MOSP00540 346 aa10.3□□□□□ -0.76
CCDC88A-207ENST00000436346 PTP4A3O75365 173 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 GCSAMLQ5JQS6 135 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 ALKBH7Q9BT30 221 aaPredicted RBP10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 VAX1Q5SQQ9 334 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 RPS20P60866 119 aaKnown RBP10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 HTN3P15516 51 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 CD300CQ08708 224 aa10.29□□□□□ -0.76
CCDC88A-207ENST00000436346 ZNF146Q15072 292 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms