RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 OR5K1Q8NHB7 308 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF721Q8TF20 911 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TBX5Q99593 518 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TXN2Q99757 166 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF426Q9BUY5 554 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM126AQ9H061 195 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RASL12Q9NYN1 266 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 IL36RNQ9UBH0 155 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 RCL1Q9Y2P8 373 aaKnown RBP2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 PEX16Q9Y5Y5 336 aa2.1□□□□□ -2.07
CCDC88A-205ENST00000426576 KDM3BQ7LBC6 1761 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV2-26A0A0B4J1V2 119 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV4-28A0A0C4DH34 117 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 SMIM9A6NGZ8 99 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 TVP23AA6NH52 213 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM223BA6NKX1 122 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 TSC22D2O75157 780 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CD1AP06126 327 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CALCBP10092 127 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 AQP2P41181 271 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 MRPL19P49406 292 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ERVS71-1P61550 626 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 RAB32Q13637 225 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 LGALS9BQ3B8N2 356 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CCSMST1Q4G0I0 132 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 SPINK9Q5DT21 86 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 RSBN1Q5VWQ0 802 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF493Q6ZR52 646 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 VN1R4Q7Z5H5 301 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 LYSMD2Q8IV50 215 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 APRG1Q8IVJ8 170 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM223AQ8IWN6 122 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CCDC71LQ8N9Z2 235 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF383Q8NA42 475 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 OR51T1Q8NGJ9 327 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 TRIB3Q96RU7 358 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 INTS14Q96SY0 518 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 OR52D1Q9H346 318 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 DCAF16Q9NXF7 216 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 MTCH1Q9NZJ7 389 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 SPATA2Q9UM82 520 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 NDUFAF1Q9Y375 327 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 LINC00312Q9Y6C7 94 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 FANCMQ8IYD8 2048 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 UBR2Q8IWV8 1755 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 KIF20BQ96Q89 1820 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CELSR1Q9NYQ6 3014 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A087WUJ7 227 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-38A0A0C4DH36 116 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A1W2PPV9 198 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 A8MWP6 167 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC16A6O15403 523 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CST2P09228 141 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 NPSP0C0P6 89 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CHTF8P0CG12 524 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 OSMP13725 252 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 HOXD13P35453 343 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 GPX4P36969 197 aaPredicted RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 PSMA6P60900 246 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL36AP83881 106 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 Q0VG73 95 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 AWAT2Q6E213 333 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 H3F3CQ6NXT2 135 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF66Q6ZN08 573 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 Q6ZRG5 221 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF534Q76KX8 674 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 LHFPL4Q7Z7J7 247 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ARHGEF39Q8N4T4 335 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 WFDC9Q8NEX5 89 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 ZFAND1Q8TCF1 268 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL36ALQ969Q0 106 aaKnown RBP2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 CCDC28BQ9BUN5 200 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 LINC00470Q9BZP3 86 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 SIX2Q9NPC8 291 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM140Q9NV12 185 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 HSPB7Q9UBY9 170 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 DOCK2Q92608 1830 aa2.09□□□□□ -2.07
CCDC88A-205ENST00000426576 COL11A2P13942 1736 aaPredicted RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 LTBP2Q14767 1821 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 KIF26AQ9ULI4 1882 aaPredicted RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 IGHV4OR15-8A0A075B7B6 117 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 A0A087WW49 117 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 IGLV1-36A0A0B4J1U3 117 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 SAC3D1A6NKF1 404 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 SNRPGP15A8MWD9 76 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 RTL8CO15255 209 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 ERGP11308 486 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 PSG2P11465 335 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 RAB3AP20336 220 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 DYNLT3P51808 116 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 RPL27P61353 136 aaKnown RBP2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 CAV1Q03135 178 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 ASAH1Q13510 395 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 C15orf32Q32M92 178 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 Q499Y3 187 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 KHDC3LQ587J8 217 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 ZNF547Q8IVP9 402 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 LINC01555Q8NAE3 123 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 DYNC2LI1Q8TCX1 351 aa2.09□□□□□ -2.08
CCDC88A-205ENST00000426576 OPALINQ96PE5 141 aa2.09□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms