RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SNURFLB1AK76 121 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 KBTBD11O94819 623 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 LYPD3O95274 346 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 MFAP4P55083 255 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 MEF2BQ02080 365 aaPredicted RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 DEFB125Q8N687 156 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 SGMS2Q8NHU3 365 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 C4orf45Q96LM5 186 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 TMEM191AQ9H0A3 160 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 ZNF665Q9H7R5 613 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 GPR132Q9UNW8 380 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 PITX3O75364 302 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 LMO1P25800 156 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 WFDC6Q9BQY6 131 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 PRDM14Q9GZV8 571 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 DEPPQ9NTK1 212 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 CLCF1Q9UBD9 225 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 PXMP4Q9Y6I8 212 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 LRP4O75096 1905 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 TRAV8-7A0A075B6U6 113 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 TM4SF5O14894 197 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 SNAI2O43623 268 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 NKX2-1P43699 371 aaPredicted RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 FUT6P51993 359 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 GCSAMLQ5JQS6 135 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 OR2H1Q9GZK4 316 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 ARID1BQ8NFD5 2236 aaPredicted RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 SSSCA1O60232 199 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 CEACAM4O75871 244 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 CDAP32320 146 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 RPS11P62280 158 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP54-205ENST00000424265 C3AR1Q16581 482 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 MRPL24Q96A35 216 aaKnown RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 ADAT3Q96EY9 351 aaPredicted RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 SRXN1Q9BYN0 137 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 DECR2Q9NUI1 292 aa8.32□□□□□ -1.08
USP54-205ENST00000424265 MBNL3Q9NUK0 354 aaKnown RBP8.32□□□□□ -1.08
USP54-205ENST00000424265 CNTRLQ7Z7A1 2325 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 IGKV3D-15A0A087WSY6 115 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 PSMB11A5LHX3 300 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 SDCBPO00560 298 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 SH2D1BO14796 132 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 IER3P46695 156 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 SEC11AP67812 179 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 HIST1H1AQ02539 215 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 RPEL1Q2QD12 228 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TSPO2Q5TGU0 170 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 OR51E1Q8TCB6 317 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 SPSB4Q96A44 273 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TAS2R4Q9NYW5 299 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 PLA2G2EQ9NZK7 142 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TNFRSF18Q9Y5U5 241 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 SS18L1O75177 396 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 HLA-DOBP13765 273 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 AADACP22760 399 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZNF133P52736 654 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 RPL23P62829 140 aaKnown RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 ACSF3Q4G176 576 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 TTC32Q5I0X7 151 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 IGFL2Q6UWQ7 119 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 Q8IYB0 196 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZDHHC23Q8IYP9 409 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZNF442Q9H7R0 627 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 PGPEP1Q9NXJ5 209 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 IGLV1-36A0A0B4J1U3 117 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 MPIG6BO95866 241 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 CA2P00918 260 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 CD3EP07766 207 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 Q6ZT83 130 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZNF695Q8IW36 515 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TEX29Q8N6K0 151 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 OR51T1Q8NGJ9 327 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZNF418Q8TF45 676 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 TIMD4Q96H15 378 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 ZNF286AQ9HBT8 521 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 DHRS3O75911 302 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TNFRSF1AP19438 455 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 BVES-AS1Q5T3Y7 98 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 TCF23Q7RTU1 214 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 FBXL14Q8N1E6 418 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 RAX2Q96IS3 184 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 UBE2J1Q9Y385 318 aaPredicted RBP8.31□□□□□ -1.08
USP54-205ENST00000424265 MPC1Q9Y5U8 109 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 PCNX2A6NKB5 2137 aa8.31□□□□□ -1.08
USP54-205ENST00000424265 E9PLN8 166 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 HMGB3O15347 200 aaKnown RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 CST7O76096 145 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 FXYD4P59646 89 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 RNASEKQ6P5S7 137 aaKnown RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 LSRQ86X29 649 aaPredicted RBP8.3□□□□□ -1.08
USP54-205ENST00000424265 LRRC75AQ8NAA5 344 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 VKORC1Q9BQB6 163 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 C5orf66Q9H5L9 145 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 SH2D2AQ9NP31 389 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 FAM90A27PA6NNH2 459 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 CBLN1P23435 193 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 GPR183P32249 361 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 TIMP3P35625 211 aa8.3□□□□□ -1.08
USP54-205ENST00000424265 RPL32P62910 135 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms