RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RNF115Q9Y4L5 304 aa2.92□□□□□ -1.94
SYNE1-212ENST00000423061 SLC25A40Q8TBP6 338 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 SLC7A10Q9NS82 523 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CNOT1A5YKK6 2376 aaKnown RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 H3BRM9 83 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 DHHO43323 396 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ASAH2BP0C7U1 165 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 MYF5P13349 255 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 F2RP25116 425 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 VWC2Q2TAL6 325 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ASPHD1Q5U4P2 390 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ABHD17AQ96GS6 310 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 DUSP23Q9BVJ7 150 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 WNT16Q9UBV4 365 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 COX5AP20674 150 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 DOCK6Q96HP0 2047 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 LYSMD4Q5XG99 296 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CYP2G1PQ6ZSU1 146 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 BCL6BQ8N143 479 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 SPAG8Q99932 426 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 TRAV8-1A0A0A6YYK1 113 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 TNXAQ16473 311 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 SYT8Q8NBV8 401 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 KISS1RQ969F8 398 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 BOKQ9UMX3 212 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 LOC102723996A0A087X1L8 192 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 A0A0A6YYD5 115 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 HS3ST1O14792 307 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 THY1P04216 161 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZIC2O95409 532 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 OXLD1Q5BKU9 147 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZIC4Q8N9L1 334 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 SSBP3Q9BWW4 388 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 EMDP50402 254 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 C6orf106Q9H6K1 298 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 TRAV24A0A0B4J272 114 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CD27P26842 260 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZFP36L1Q07352 338 aaKnown RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ACP7Q6ZNF0 438 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 TSKUQ8WUA8 353 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZDBF2Q9HCK1 2354 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 PSG5Q15238 335 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 C1QTNF5Q9BXJ0 243 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 GNG5P63218 68 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 KIR3DL3Q8N743 410 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 APOBEC4Q8WW27 367 aaKnown RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 A0A0B4J2E0 115 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 A0A1B0GX12 115 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 A0A1W2PPM0 123 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ATP5G3P48201 142 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 B4GALNT1Q00973 533 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 RASL11AQ6T310 242 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ARHGEF17Q96PE2 2063 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 RHOGP84095 191 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 S1PR5Q9H228 398 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 C3orf85A0A1B0GTC6 90 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CA6P23280 308 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 MFAP5Q13361 173 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF114Q8NC26 417 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 UBALD1Q8TB05 177 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 HIST1H4GQ99525 98 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 P04436 131 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 VSIG8P0DPA2 414 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 FCGR2BP31994 310 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 LILRA6Q6PI73 481 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 INO80CQ6PI98 192 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 BCORP1Q8N888 145 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 LINC01555Q8NAE3 123 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 LIAT1Q6ZQX7 453 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 DCAF12Q5T6F0 453 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 PQLC2Q6ZP29 291 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ASCL5Q7RTU5 278 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 GLMPQ8WWB7 406 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 MAP1LC3AQ9H492 121 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CASP8AP2Q9UKL3 1982 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 CENPVL1A0A0U1RR11 272 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ETV2O00321 342 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 ZP4Q12836 540 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 PLGLAQ15195 96 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 OSR1Q8TAX0 266 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 PPDPFQ9H3Y8 114 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 DUX4L9Q6RFH8 374 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 C6orf15Q6UXA7 325 aaPredicted RBP2.91□□□□□ -1.94
SYNE1-212ENST00000423061 BCL3P20749 454 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 HERVK_113P61574 105 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 OR52N5Q8NH56 324 aa2.91□□□□□ -1.94
SYNE1-212ENST00000423061 SP1P08047 785 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 SUPT4H1P63272 117 aaKnown RBP2.9□□□□□ -1.94
SYNE1-212ENST00000423061 SLC25A33Q9BSK2 321 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 MS4A6AQ9H2W1 248 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 TAS2R45P59539 299 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM171Q8WVE6 324 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 TIMD4Q96H15 378 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 DOCK11Q5JSL3 2073 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 GDF1P27539 372 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 H1FNTQ75WM6 255 aaPredicted RBP2.9□□□□□ -1.94
SYNE1-212ENST00000423061 PLXDC1Q8IUK5 500 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 GGTLC1Q9BX51 225 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 TMEM187Q14656 261 aa2.9□□□□□ -1.94
SYNE1-212ENST00000423061 OR5P3Q8WZ94 311 aa2.9□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms