RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TMEM56-RWDD3S4R434 201 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 DSPPQ9NZW4 1301 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ZNF469Q96JG9 3925 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 SMIM31A0A1B0GVY4 71 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 A0A1B0GX78 115 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 DAPL1A0PJW8 107 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ARRDC5A6NEK1 342 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 FTCDNL1E5RQL4 147 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 IGKV3-20P01619 116 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 DBIP07108 87 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 GUSBP08236 651 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 COX6A1P12074 109 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 HIST1H1CP16403 213 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 POLR2IP36954 125 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 IFNGR2P38484 337 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 PPOXP50336 477 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 CRIP2P52943 208 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 BTG2P78543 158 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 DCDP81605 110 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 CDK5Q00535 292 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 RUNX1Q01196 453 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 BIKQ13323 160 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 TMEM205Q6UW68 189 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 LINC00471Q8N535 108 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 TMEM251Q8N6I4 163 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 POM121L12Q8N7R1 296 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 BPIFB6Q8NFQ5 453 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 BEST4Q8NFU0 473 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 SDF2Q99470 211 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 OPRPNQ99935 248 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 ANAPC13Q9BS18 74 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 CXorf21Q9HAI6 301 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 C14orf105Q9NVL8 296 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 SCN3BQ9NY72 215 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 DHCR7Q9UBM7 475 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 ZNF443Q9Y2A4 671 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 TRAV8-6A0A0B4J262 113 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ZFP92A6NM28 416 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 CPSF4LA6NMK7 179 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 FFAR1O14842 300 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 HLA-AP01891 365 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 CRYBA4P53673 196 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 TAS2R60P59551 318 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 GABARAPL2P60520 117 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 CDC42P60953 191 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 UBE2NP61088 152 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 IGLV3-21P80748 117 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 CD164Q04900 197 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 EGFEM1PQ0D2K5 195 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ATAD3CQ5T2N8 411 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ARL9Q6T311 187 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 LGI3Q8N145 548 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 OR4D11Q8NGI4 311 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 OR2K2Q8NGT1 345 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 SMIM19Q96E16 107 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 TSNAXQ99598 290 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 PITX2Q99697 317 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 PDCD1LG2Q9BQ51 273 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 MRPL20Q9BYC9 149 aaKnown RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 SELENOIQ9C0D9 397 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 CCDC90BQ9GZT6 254 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 TPRKBQ9Y3C4 175 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 ZNF706Q9Y5V0 76 aaPredicted RBP1.86□□□□□ -2.11
MCF2-204ENST00000414978 ADGRG4Q8IZF6 3080 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 SPTBP11277 2137 aa1.86□□□□□ -2.11
MCF2-204ENST00000414978 NBASA2RRP1 2371 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 INSP01308 110 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 IGHV3-48P01763 117 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 HSPB1P04792 205 aaKnown RBP1.85□□□□□ -2.11
MCF2-204ENST00000414978 CD5P06127 495 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 GABRA1P14867 456 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 CRHBPP24387 322 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 PMELP40967 661 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 ZNF138P52744 262 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 NEDD8Q15843 81 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 NNATQ16517 81 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 MRPL2Q5T653 305 aaKnown RBP1.85□□□□□ -2.11
MCF2-204ENST00000414978 DGAT2L6Q6ZPD8 337 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 RASSF6Q6ZTQ3 369 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 OR11G2Q8NGC1 345 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 OR4K5Q8NGD3 323 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 OR4C13Q8NGP0 309 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 OR10J6PQ8NGY7 276 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 PIGXQ8TBF5 258 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 RBPMSQ93062 196 aaKnown RBP1.85□□□□□ -2.11
MCF2-204ENST00000414978 TSC22D3Q99576 134 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 YIPF3Q9GZM5 350 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 OR8D2Q9GZM6 311 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 ZDHHC11Q9H8X9 412 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 FAM206AQ9NX38 181 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 IGKV3D-15A0A087WSY6 115 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 LOC102724200A0A096LPH7 203 aaPredicted RBP1.85□□□□□ -2.11
MCF2-204ENST00000414978 IGHV1-45A0A0A0MS14 117 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 A0A0A6YYH2 397 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 TRAPPC13A5PLN9 417 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 A6NJ64 397 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 CLDN24A6NM45 220 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 ZNF878C9JN71 531 aa1.85□□□□□ -2.11
MCF2-204ENST00000414978 GATCO43716 136 aaKnown RBP1.85□□□□□ -2.11
MCF2-204ENST00000414978 ENTPD6O75354 484 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms