RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ABCA3Q99758 1704 aa11.52□□□□□ -0.56
CCDC88A-204ENST00000413716 ATP5IP56385 69 aaPredicted RBP11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 DPM2O94777 84 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 GPX4P36969 197 aaPredicted RBP11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 TRAV2A0A0B4J234 112 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 CD8AP01732 235 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 MORN3Q6PF18 240 aaPredicted RBP11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 GATD1Q8NB37 220 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 LINC00615Q96LM1 132 aaPredicted RBP11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF576Q9H609 170 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 STRCQ7RTU9 1775 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 IGKV3-20P01619 116 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 RNASE4P34096 147 aaKnown RBP11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 SPINK14Q6IE38 97 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF146Q15072 292 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 ALKAL1Q6UXT8 129 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 PARP14Q460N5 1801 aa11.52□□□□□ -0.57
CCDC88A-204ENST00000413716 GUSBP11Q6P575 273 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 FAM90A26D6RGX4 464 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 DNAJC30Q96LL9 226 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 VKORC1Q9BQB6 163 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 CD69Q07108 199 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 LINC00305Q7Z4B0 112 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 SCN7AQ01118 1682 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 NRAPQ86VF7 1730 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 TMEM238C9JI98 176 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 HBDP02042 147 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 LAMTOR2Q9Y2Q5 125 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 A0A1W2PPE3 182 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF729A6NN14 1252 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 SPINT1O43278 529 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 ESDP10768 282 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 GCSAMQ8N6F7 178 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF488Q96MN9 340 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 TRGV2A0A075B6R0 118 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 SERGEFQ9UGK8 458 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 COL16A1Q07092 1604 aaPredicted RBP11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 MARCH11A6NNE9 402 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 TBR1Q16650 682 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 FIZ1Q96SL8 496 aa11.51□□□□□ -0.57
CCDC88A-204ENST00000413716 ZNF658BQ4V348 819 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 OR10W1Q8NGF6 305 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 KLK13Q9UKR3 277 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 EGR1P18146 543 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 C9orf153Q5TBE3 101 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 INO80CQ6PI98 192 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 CCL4L1Q8NHW4 92 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 TRPM7Q96QT4 1865 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 VSIG10L2P0DP72 767 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 TSPAN7P41732 249 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 TNFRSF9Q07011 255 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 CEACAM21Q3KPI0 293 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 LRRC61Q9BV99 259 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 ARHGAP32A7KAX9 2087 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 SOX8P57073 446 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 MARS2Q96GW9 593 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 TRAV24A0A0B4J272 114 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 PNLIPP16233 465 aa11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 DMKNQ6E0U4 476 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-204ENST00000413716 REG1AP05451 166 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 HOXD4P09016 255 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 HIKESHIQ53FT3 197 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 FDCSPQ8NFU4 85 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 ERG28Q9UKR5 140 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 XIRP1Q702N8 1843 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 NKX2-2O95096 273 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 OR11H4Q8NGC9 324 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 TRAV9-1A0A075B6T8 112 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 OGG1O15527 345 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 PATE4P0C8F1 98 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 RTN4RL2Q86UN3 420 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 A0A0U1RQV5 110 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 AGFG2O95081 481 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 FAM57AQ8TBR7 257 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 DANCRP0C864 163 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 HSPE1P61604 102 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 COQ2Q96H96 371 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 PPIAL4EA0A075B759 164 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 IFNL4K9M1U5 179 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 PPIAL4FP0DN26 164 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 RPP21Q9H633 154 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 KLF12Q9Y4X4 402 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 PPIAL4AQ9Y536 164 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 EML6Q6ZMW3 1958 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 HMGA2P52926 109 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 GPR146Q96CH1 333 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 SEPSECSQ9HD40 501 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 GLULP15104 373 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 PMS2CLQ68D20 193 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 NABP2Q9BQ15 211 aa11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 SSBP3Q9BWW4 388 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-204ENST00000413716 KLKB1P03952 638 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 ERVK11-1P61568 191 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 CXCL2P19875 107 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 FOXA3P55318 350 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 APOBEC4Q8WW27 367 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 SRSF1Q07955 248 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 ITLN2Q8WWU7 325 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 PLCE1Q9P212 2302 aa11.48□□□□□ -0.57
CCDC88A-204ENST00000413716 CD5LO43866 347 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms