RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 M0R2Z0 102 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 CD5LO43866 347 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 IGLV1-44P01699 117 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 KLK2P20151 261 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 FGF7P21781 194 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 GADD45AP24522 165 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 CMPK1P30085 196 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 HERVK_113P61574 105 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 NCS1P62166 190 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM267Q0VDI3 215 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 FCN2Q15485 313 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 SSX1Q16384 188 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 RSPO1Q2MKA7 263 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 GLYATQ6IB77 296 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 CEMP1Q6PRD7 247 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 TEX261Q6UWH6 196 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 RNF165Q6ZSG1 346 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 Q6ZSR6 202 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 C20orf196Q8IYI0 205 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 C12orf45Q8N5I9 185 aaPredicted RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 DEFB125Q8N687 156 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 OR5P3Q8WZ94 311 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 ISOC1Q96CN7 298 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 SMIM3Q9BZL3 60 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 LPAR5Q9H1C0 372 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 GPR84Q9NQS5 396 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 PRTFDC1Q9NRG1 225 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 MRPL16Q9NX20 251 aaKnown RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 MED11Q9P086 117 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 LAMTOR2Q9Y2Q5 125 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 PARP4Q9UKK3 1724 aaKnown RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 IGKV3D-15A0A087WSY6 115 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM250H0YL14 139 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 K7EPK0 472 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 AIPO00170 330 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF207O43670 478 aaKnown RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 OR7C2O60412 319 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 IGHMP01871 453 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CRYBA1P05813 215 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 OR4Q2P0C623 313 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CFC1BP0CG36 223 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CFC1P0CG37 223 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CTLA4P16410 223 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 EVI2AP22794 236 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 GATA2P23769 480 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 IL3RAP26951 378 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 MP68P56378 58 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 HIST1H1AQ02539 215 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 MORN2Q502X0 79 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF497Q6ZNH5 498 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 OR13C8Q8NGS7 320 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 OR1L1Q8NH94 360 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 SLC35E1Q96K37 410 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 LYSMD1Q96S90 227 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 NRIP2Q9BQI9 281 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 OR2D2Q9H210 308 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CST9LQ9H4G1 147 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 PLEKHF2Q9H8W4 249 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 CACYBPQ9HB71 228 aaKnown RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 COL5A2P05997 1499 aaPredicted RBP2.97□□□□□ -1.93
HMGB1-204ENST00000399489 LMO7Q8WWI1 1683 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 SPATA31E1Q6ZUB1 1445 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 ANKRD36BQ8N2N9 1353 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 TONSLQ96HA7 1378 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 MED23Q9ULK4 1368 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 KNDC1Q76NI1 1749 aa2.97□□□□□ -1.93
HMGB1-204ENST00000399489 A0A087WUU8 490 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 IGHV3-74A0A0B4J1X5 117 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 A0A0J9YY10 115 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 SMIM31A0A1B0GVY4 71 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 A0A1B0GX78 115 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 CD300LBA8K4G0 201 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF705GA8MUZ8 300 aaPredicted RBP2.96□□□□□ -1.93
HMGB1-204ENST00000399489 KRBOX1C9JBD0 128 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 NDUFC2-KCTD14E9PQ53 114 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 SLC37A4O43826 429 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 IGLV2-8P01709 118 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 IGHG2P01859 326 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 SERPINE1P05121 402 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 HIST1H1BP16401 226 aaKnown RBP2.96□□□□□ -1.93
HMGB1-204ENST00000399489 RPL7P18124 248 aaKnown RBP2.96□□□□□ -1.93
HMGB1-204ENST00000399489 AZU1P20160 251 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 KDELR1P24390 212 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 BLVRBP30043 206 aaPredicted RBP2.96□□□□□ -1.93
HMGB1-204ENST00000399489 HBA1P69905 142 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 TNFAIP6P98066 277 aaPredicted RBP2.96□□□□□ -1.93
HMGB1-204ENST00000399489 HTR4Q13639 388 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 ORMDL2Q53FV1 153 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 UBE2NLQ5JXB2 153 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 NCMAPQ5T1S8 102 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 NXNL2Q5VZ03 156 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF773Q6PK81 442 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 LYPD2Q6UXB3 125 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF767PQ75MW2 155 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 ATP5L2Q7Z4Y8 100 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 LYG1Q8N1E2 194 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 Q8N377 158 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM75Q8N9X5 138 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 NPBQ8NG41 125 aa2.96□□□□□ -1.93
HMGB1-204ENST00000399489 OR1J4Q8NGS1 313 aa2.96□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms