RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 VAX1Q5SQQ9 334 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 SIGIRRQ6IA17 410 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 REPIN1Q9BWE0 567 aaKnown RBP12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 PKIBQ9C010 78 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 ALX4Q9H161 411 aaPredicted RBP12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 CA2P00918 260 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 TMEM177Q53S58 311 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 CABIN1Q9Y6J0 2220 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 ARL14EPLP0DKL9 152 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 MEGF10Q96KG7 1140 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 ZXDCQ2QGD7 858 aaPredicted RBP12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 RPL39P5Q59GN2 51 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 SRSF12Q8WXF0 261 aaKnown RBP12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 GPR82Q96P67 336 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 ATG101Q9BSB4 218 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 CHD5Q8TDI0 1954 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 ZDBF2Q9HCK1 2354 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 C9JCJ5 164 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 TGFBR3LH3BV60 316 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 KLK2P20151 261 aa12.09□□□□□ -0.47
PCDHA11-201ENST00000398640 NINQ8N4C6 2090 aa12.08□□□□□ -0.47
PCDHA11-201ENST00000398640 IGHV3-11P01762 117 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 OTX1P32242 354 aaPredicted RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 SELENOTP62341 195 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 ZNF345Q14585 488 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 UBE2V2Q15819 145 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 MPDU1O75352 247 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 COX5BP10606 129 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 SERF2P84101 59 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 ABLIM2Q6H8Q1 611 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 RARRES2Q99969 163 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 DNAJC4Q9NNZ3 241 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 TRBV5-5A0A0J9YX44 114 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 TMEM54Q969K7 222 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 LSM10Q969L4 123 aaKnown RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 RAB24Q969Q5 203 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 SIP14410 1827 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 DOCK6Q96HP0 2047 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 PPP1R17O96001 155 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 DEFB121Q5J5C9 76 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 TMEM186Q96B77 213 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 SH3BGRL3Q9H299 93 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 ZNF729A6NN14 1252 aaPredicted RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 FOXI3A8MTJ6 420 aaPredicted RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 GCM2O75603 506 aaPredicted RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 HSPE1P61604 102 aaKnown RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 MBNL2Q5VZF2 373 aaKnown RBP12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 ZNF818PQ6ZRF7 136 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 COLCA1Q6ZS62 124 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 OR51M1Q9H341 326 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 JPT1Q9UK76 154 aa12.08□□□□□ -0.48
PCDHA11-201ENST00000398640 TRAV30A0A087WSZ9 112 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 PSMB11A5LHX3 300 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 SIAH2O43255 324 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 HLA-DQB1P01920 261 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 AMY1AP04745 511 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 NRN1LQ496H8 165 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 TAF15Q92804 592 aaKnown RBP eCLIP12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 IGHV3OR16-8A0A075B7F1 116 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 LOC107984156A0A0G2JMH3 177 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 IL4P05112 153 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 TSPOP30536 169 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 ARL17AQ8IVW1 177 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 TP53RKQ96S44 253 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 DPH3P1Q9H4G8 78 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 P2RY4P51582 365 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 NUTF2P61970 127 aaKnown RBP12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 JMJD8Q96S16 334 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 VWA8A3KMH1 1905 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 MUC1P15941 1255 aaPredicted RBP12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 CD69Q07108 199 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 DNLZQ5SXM8 178 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 DNM1P46Q6ZS02 220 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 NPIPB3Q92617 1050 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 FAM131CQ96AQ9 280 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 PRSS2P07478 247 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 TNFRSF9Q07011 255 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 MEIG1Q5JSS6 88 aa12.07□□□□□ -0.48
PCDHA11-201ENST00000398640 FAM216BQ8N7L0 139 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 LHFPL5Q8TAF8 219 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 SPRR3Q9UBC9 169 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 IGKV1D-42A0A075B6H8 117 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 GCGP01275 180 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 CRYBB3P26998 211 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 LHX2P50458 406 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 FBXL15Q9H469 300 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 KLF4O43474 513 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 HKR1P10072 659 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 PLA2G5P39877 138 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 GREB1Q4ZG55 1949 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 LYNX1G3V0Z9 82 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 NPFFO15130 113 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 RAMP1O60894 148 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 LYNX1P0DP58 116 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 SCGB1A1P11684 91 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 IGHV1-2P23083 117 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 GLRXP35754 106 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 AQP3Q92482 292 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 G6PC2Q9NQR9 355 aa12.06□□□□□ -0.48
PCDHA11-201ENST00000398640 CBLN4Q9NTU7 201 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms