RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MBNL2Q5VZF2 373 aaKnown RBP8.06□□□□□ -1.12
COL6A3-204ENST00000392003 LCN15Q6UWW0 184 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 CISD2Q8N5K1 135 aaKnown RBP8.06□□□□□ -1.12
COL6A3-204ENST00000392003 RFESDQ8TAC1 157 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 SCNM1Q9BWG6 230 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 H3BQ15 152 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 M0R1B8 84 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 GGCTO75223 188 aaKnown RBP8.06□□□□□ -1.12
COL6A3-204ENST00000392003 PRDX2P32119 198 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 Q6ZS92 163 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 ZNF429Q86V71 674 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 STPG4Q8N801 248 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 ZCCHC14Q8WYQ9 949 aaKnown RBP8.06□□□□□ -1.12
COL6A3-204ENST00000392003 STARD4Q96DR4 205 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 COQ2Q96H96 371 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 RBKSQ9H477 322 aa8.06□□□□□ -1.12
COL6A3-204ENST00000392003 TGIF2-C20orf24A0A0A6YYL0 155 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 IGHV3-43A0A0B4J1X8 118 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CEACAM4O75871 244 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 IGLV1-44P01699 117 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CRYAAP02489 173 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ADH4P08319 380 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 IGHV3-43DP0DP04 118 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 BMP5P22003 454 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 LTC4SQ16873 150 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 LRRC75BQ2VPJ9 315 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 TPTE2P1Q5T6R2 138 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ZNF66Q6ZN08 573 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 Q6ZR03 302 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 TPRX1Q8N7U7 411 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ABHD17AQ96GS6 310 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CIB3Q96Q77 187 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 OR4C12Q96R67 309 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 HSD17B10Q99714 261 aaKnown RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 RPRMQ9NS64 109 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 GNG12Q9UBI6 72 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 PSG11Q9UQ72 335 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 POLR3KQ9Y2Y1 108 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 INTS1Q8N201 2190 aaKnown RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 UBE2L5PA0A1B0GUS4 154 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ZFP92A6NM28 416 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CEBPZOSA8MTT3 80 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 APOBEC3AP31941 199 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 OR4C5Q8NGB2 326 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CLDND2Q8NHS1 167 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 TVP23CQ96ET8 276 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 HINT2Q9BX68 163 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 TRAV1-1A0A0B4J248 108 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 SSTR5P35346 364 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ELLP55199 621 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-204ENST00000392003 UBE2V1Q13404 147 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ICAM4Q14773 271 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 IGFL3Q6UXB1 125 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CYB561D1Q8N8Q1 229 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 ZNF709Q8N972 641 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 OR13A1Q8NGR1 328 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 YPEL4Q96NS1 127 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CST9LQ9H4G1 147 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 SLC39A9Q9NUM3 307 aa8.05□□□□□ -1.12
COL6A3-204ENST00000392003 CACNA1DQ01668 2161 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 LRRC30A6NM36 301 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 DEFB108AA8MXU0 73 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 K7EM74 188 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RAB29O14966 203 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RAMP3O60896 148 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 TNFSF13O75888 250 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 S1PR2O95136 353 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 CLDN14O95500 239 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 TFF1P04155 84 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 LIPFP07098 398 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 GPR12P47775 334 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RAB11AP62491 216 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RPL30P62888 115 aaKnown RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 ARL16Q0P5N6 197 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 ZNF295-AS1Q8N0V1 137 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 FAM169BQ8N8A8 192 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 OR10P1Q8NGE3 313 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 Q8WTZ3 238 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 TAF15Q92804 592 aaKnown RBP eCLIP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 ACTR3CQ9C0K3 210 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 WDR61Q9GZS3 305 aaKnown RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 HIF1ANQ9NWT6 349 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 HSPB7Q9UBY9 170 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 HEATR1Q9H583 2144 aaKnown RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 ODAMA1E959 279 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 MBD3L4A6NDZ8 208 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 MBD3L3A6NE82 208 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 MBD3L5A6NJ08 208 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 C17orf98A8MV24 154 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 DVL1O14640 695 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 TMEM41BQ5BJD5 291 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 GFRALQ6UXV0 394 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RBMXL3Q8N7X1 1067 aaKnown RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 MBD3L2Q8NHZ7 208 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-204ENST00000392003 RAB39BQ96DA2 213 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 TMEM147Q9BVK8 224 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 MEGF9Q9H1U4 602 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 METRNQ9UJH8 293 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 SLC25A15Q9Y619 301 aa8.04□□□□□ -1.12
COL6A3-204ENST00000392003 LOC102723971A0A1B0GUV8 181 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms