RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 OR11H1Q8NG94 326 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 OR11H2Q8NH07 326 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 DUX3Q96PT4 197 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 SOX21Q9Y651 276 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 SH3BGRL3Q9H299 93 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 ASXL3Q9C0F0 2248 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 PILRAQ9UKJ1 303 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 LHFPL6Q9Y693 200 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 PRR19A6NJB7 356 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 BIVMQ86UB2 503 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 LEAP2Q969E1 77 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 SIRT4Q9Y6E7 314 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 UCP3P55916 312 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM54Q969K7 222 aa10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 SCARF2Q96GP6 870 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-204ENST00000389857 IGLV1-36A0A0B4J1U3 117 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 C9JCJ5 164 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 HLA-DQB1P01920 261 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 NEUROG1Q92886 237 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 Q96M66 194 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 J3QW42 95 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 ATP5LO75964 103 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SOD3P08294 240 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 COX6A1P12074 109 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 CA7P43166 264 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 GLIPR1P48060 266 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 A0A1W2PP11 408 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 RRHO14718 337 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 TM4SF5O14894 197 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 PAX1P15863 534 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 GCHFRP30047 84 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 RTN4RL2Q86UN3 420 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 VKORC1L1Q8N0U8 176 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 FMC1Q96HJ9 113 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SSBP3Q9BWW4 388 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SCN2AQ99250 2005 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 ACSF3Q4G176 576 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 CENPWQ5EE01 88 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 CFAP161Q6P656 301 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 PPP1R3EQ9H7J1 279 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 PILRBQ9UKJ0 227 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 TRBV5-7A0A0A0MS05 114 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF98A6NK75 572 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SMAD7O15105 426 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 DANCRP0C864 163 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 ERGP11308 486 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SRXN1Q9BYN0 137 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 SDF2L1Q9HCN8 221 aa10.92□□□□□ -0.66
CCDC88C-204ENST00000389857 ICE1Q9Y2F5 2266 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 CNTFRP26992 372 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 PEAR1Q5VY43 1037 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 LEMD1Q68G75 181 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF818PQ6ZRF7 136 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 SP7Q8TDD2 431 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 VCX2Q9H322 139 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 PEF1Q9UBV8 284 aaKnown RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF660Q6AZW8 331 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 NPIPB3Q92617 1050 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 SHANK3Q9BYB0 1731 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 GATAD1Q8WUU5 269 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 RND3P61587 244 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 TMEM187Q14656 261 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 ITLN2Q8WWU7 325 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 OR5P3Q8WZ94 311 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 SEMA5BQ9P283 1151 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 NPIPB9F8W1W9 429 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 NPIPB7O75200 414 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 PEMTQ9UBM1 199 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 H0YL77 283 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 C1QL1O75973 258 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 HOXA5P20719 270 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 NEU4Q8WWR8 484 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 PSMG3Q9BT73 122 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 C11orf68Q9H3H3 251 aaKnown RBP10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 PIKFYVEQ9Y2I7 2098 aa10.91□□□□□ -0.66
CCDC88C-204ENST00000389857 DDTP30046 118 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 GPX4P36969 197 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 WDR82Q6UXN9 313 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 GGACTQ9BVM4 153 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 SPAG17Q6Q759 2223 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 SLC25A20O43772 301 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 C5orf66Q9H5L9 145 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 KNTC1P50748 2209 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 IGKV1-8A0A0C4DH67 115 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 LOC390937A0A1W2PQ73 354 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 MALP21145 153 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 OR4X2Q8NGF9 303 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 ZNF418Q8TF45 676 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 SCGB3A1Q96QR1 104 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 IGHV3OR16-10A0A075B7F0 116 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 A0A1B0GW15 77 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 MOSPD3O75425 235 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 ADAMTSL1Q8N6G6 1762 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 VENTXO95231 258 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 ICAM4Q14773 271 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 TEX45Q8NA69 505 aa10.9□□□□□ -0.66
CCDC88C-204ENST00000389857 MOSP00540 346 aa10.9□□□□□ -0.67
CCDC88C-204ENST00000389857 TDGF1P13385 188 aa10.9□□□□□ -0.67
CCDC88C-204ENST00000389857 DNAJC13O75165 2243 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms