RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 KIR2DL5AQ8N109 375 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 GPHA2Q96T91 129 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 PYGO2Q9BRQ0 406 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 SRD5A3Q9H8P0 318 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 LYRM2Q9NU23 88 aaPredicted RBP11.84□□□□□ -0.51
HMGA1-203ENST00000374116 OR1A1Q9P1Q5 309 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 WSB1Q9Y6I7 421 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 SERPINE2P07093 398 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 ERVFC1-1P60608 527 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 ZNF266Q14584 549 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 TESK1Q15569 626 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 CXorf66Q5JRM2 361 aaPredicted RBP11.83□□□□□ -0.51
HMGA1-203ENST00000374116 TMEM182Q6ZP80 229 aaPredicted RBP11.83□□□□□ -0.51
HMGA1-203ENST00000374116 OR2Z1Q8NG97 314 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 ACY3Q96HD9 319 aa11.83□□□□□ -0.51
HMGA1-203ENST00000374116 CHD3Q12873 2000 aaKnown RBP11.83□□□□□ -0.52
HMGA1-203ENST00000374116 TRAV1-1A0A0B4J248 108 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 A0A1B0GU03 582 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 FAM24AA6NFZ4 105 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 LYNX1G3V0Z9 82 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 HSPA12AO43301 675 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 SSSCA1O60232 199 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 PITX3O75364 302 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 HBE1P02100 147 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 LYNX1P0DP58 116 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 ZNF25P17030 456 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-203ENST00000374116 TGIF2LYQ8IUE0 185 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 CYB561D1Q8N8Q1 229 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 SNX22Q96L94 193 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 KCNIP1Q9NZI2 227 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 URGCP-MRPS24S4R325 110 aa11.83□□□□□ -0.52
HMGA1-203ENST00000374116 PRRC2AP48634 2157 aaKnown RBP11.83□□□□□ -0.52
HMGA1-203ENST00000374116 TRAV39A0A0B4J263 110 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 TMEM30CPA0ZSE6 113 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 IGSF23A1L1A6 192 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 C17orf100A8MU93 164 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 PPP5D1E7EU14 171 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 IGHV1-46P01743 117 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 IGHV4-39P01824 125 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 G0S2P27469 103 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 ATP5J2P56134 94 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 CCL20P78556 96 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 BAXQ07812 192 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 IQCJQ1A5X6 159 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 DEFB113Q30KQ7 82 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 SLC35E4Q6ICL7 350 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 OR51H1Q8NH63 302 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 CLDND2Q8NHS1 167 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 TMEM208Q9BTX3 173 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 AKAP9Q99996 3911 aa11.82□□□□□ -0.52
HMGA1-203ENST00000374116 IGLV2-14P01704 120 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 PSG2P11465 335 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 MRPS11P82912 194 aaKnown RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 MZT1Q08AG7 82 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 C1orf194Q5T5A4 169 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 WDR82Q6UXN9 313 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 TMEM252Q8N6L7 170 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 OR4X1Q8NH49 305 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 LSM10Q969L4 123 aaKnown RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 ATG101Q9BSB4 218 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 MAGT1Q9H0U3 335 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 RBM7Q9Y580 266 aaKnown RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 ZNF469Q96JG9 3925 aaPredicted RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 LOC102723971A0A1B0GUV8 181 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 HOXA4Q00056 320 aaPredicted RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 ACP7Q6ZNF0 438 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 OR10A7Q8NGE5 316 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 GPR146Q96CH1 333 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 MS4A5Q9H3V2 200 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 LIN7CQ9NUP9 197 aaKnown RBP11.81□□□□□ -0.52
HMGA1-203ENST00000374116 TEX15Q9BXT5 2789 aa11.81□□□□□ -0.52
HMGA1-203ENST00000374116 RNF212BA8MTL3 300 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 CHST1O43916 411 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 PSPNO60542 156 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 RPLP1P05386 114 aaKnown RBP11.8□□□□□ -0.52
HMGA1-203ENST00000374116 PPOXP50336 477 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 C21orf62-AS1Q17RA5 79 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 FAM90A2PQ658T7 463 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 ZNF826PQ6ZT77 177 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 PPP1R3CQ9UQK1 317 aa11.8□□□□□ -0.52
HMGA1-203ENST00000374116 OOEPA6NGQ2 149 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 IFNL4K9M1U5 179 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 COL8A2P25067 703 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 ATP6V0CP27449 155 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 CEBPDP49716 269 aaPredicted RBP11.79□□□□□ -0.52
HMGA1-203ENST00000374116 CYB5R2Q6BCY4 276 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 ZNF525Q8N782 197 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 ZBTB34Q8NCN2 500 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 ITLN1Q8WWA0 313 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 GALMQ96C23 342 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 GNPNAT1Q96EK6 184 aaPredicted RBP11.79□□□□□ -0.52
HMGA1-203ENST00000374116 RAB1BQ9H0U4 201 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 KCNS2Q9ULS6 477 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 A0A0G2JRQ6 117 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 WNT9BO14905 357 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 TMEM50AO95807 157 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 TNFAIP6P98066 277 aaPredicted RBP11.79□□□□□ -0.52
HMGA1-203ENST00000374116 SMIM21Q3B7S5 101 aa11.79□□□□□ -0.52
HMGA1-203ENST00000374116 PRAMEF6Q5VXH4 476 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms