RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 TMEM167AQ8TBQ9 72 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 DGCR14Q96DF8 476 aaKnown RBP13.23□□□□□ -0.29
CLN3-203ENST00000357806 SOSTQ9BQB4 213 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 SLA2Q9H6Q3 261 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 BET1LQ9NYM9 111 aa13.23□□□□□ -0.29
CLN3-203ENST00000357806 S1PR2O95136 353 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 AKAIN1P0CW23 69 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 PGAM2P15259 253 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 POU2AF1Q16633 256 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 SCGB2B2Q4G0G5 96 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 OR4A47Q6IF82 309 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 OR4A5Q8NH83 315 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 ZNF486Q96H40 463 aaPredicted RBP13.22□□□□□ -0.29
CLN3-203ENST00000357806 SLC2A9Q9NRM0 540 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 VSIG4Q9Y279 399 aa13.22□□□□□ -0.29
CLN3-203ENST00000357806 H3BUA1 57 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 MPPED1O15442 326 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 MAS1LP35410 378 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 MYCNOSP40205 109 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 PPP5CP53041 499 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 TPPP2P59282 170 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 DEFB136Q30KP8 78 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 TBC1D26Q86UD7 250 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 LINC00482Q8N8I6 264 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 DMBX1Q8NFW5 382 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 CASTOR1Q8WTX7 329 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 SPIN2AQ99865 258 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 SPIN2BQ9BPZ2 258 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 HRASLSQ9HDD0 168 aa13.21□□□□□ -0.3
CLN3-203ENST00000357806 MSGN1A6NI15 193 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 DISC1C4P0D8 188 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 CCL24O00175 119 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 ECI1P42126 302 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 ERVK-16P61578 105 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 RPL8P62917 257 aaKnown RBP13.2□□□□□ -0.3
CLN3-203ENST00000357806 KIAA0141Q14154 515 aaPredicted RBP13.2□□□□□ -0.3
CLN3-203ENST00000357806 ASPHD1Q5U4P2 390 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 FAAP20Q6NZ36 180 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 MRPL41Q8IXM3 137 aaKnown RBP13.2□□□□□ -0.3
CLN3-203ENST00000357806 WFDC9Q8NEX5 89 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 OR4C16Q8NGL9 310 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 TERB2Q8NHR7 220 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 RAX2Q96IS3 184 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 P2RX4Q99571 388 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 GNB4Q9HAV0 340 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 ZNF355PQ9NSJ1 428 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 FAM212BQ9NTI7 297 aaPredicted RBP13.2□□□□□ -0.3
CLN3-203ENST00000357806 V9GYH0 126 aa13.2□□□□□ -0.3
CLN3-203ENST00000357806 ANKRD20A5PA0PJZ0 165 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 MARCH11A6NNE9 402 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 TRGV3P03979 118 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 APELAP0DMC3 54 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 RPL27AP46776 148 aaKnown RBP13.19□□□□□ -0.3
CLN3-203ENST00000357806 RND3P61587 244 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 C10orf55Q5SWW7 151 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 OR5T1Q8NG75 326 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 ZFAND1Q8TCF1 268 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 MS4A10Q96PG2 267 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 DUX3Q96PT4 197 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 TMEM140Q9NV12 185 aa13.19□□□□□ -0.3
CLN3-203ENST00000357806 DPPA5A6NC42 116 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 G3V4G9 280 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 ZNF735P0CB33 412 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 PTBP1P26599 531 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLN3-203ENST00000357806 LPAR6P43657 344 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 PIGPP57054 158 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 RUNX1Q01196 453 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 PYDC2Q56P42 97 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 SPANXN2Q5MJ10 180 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 SAMD5Q5TGI4 173 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 CCDC190Q86UF4 302 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 RCC1LQ96I51 464 aaKnown RBP13.18□□□□□ -0.3
CLN3-203ENST00000357806 COA4Q9NYJ1 87 aa13.18□□□□□ -0.3
CLN3-203ENST00000357806 I3L521 148 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 BRI3O95415 125 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 DUS4LO95620 317 aaKnown RBP13.17□□□□□ -0.3
CLN3-203ENST00000357806 FGF2P09038 288 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 OR9G9P0C7N8 305 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 HLA-GP17693 338 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 PI3P19957 117 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 ZNF79Q15937 498 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 ZNF585BQ52M93 769 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 C1QL4Q86Z23 238 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 CCDC71LQ8N9Z2 235 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 OR11H1Q8NG94 326 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 OR13C8Q8NGS7 320 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 OR5B12Q96R08 314 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 PRRT1Q99946 306 aa13.17□□□□□ -0.3
CLN3-203ENST00000357806 THAP7Q9BT49 309 aaPredicted RBP13.17□□□□□ -0.3
CLN3-203ENST00000357806 UPK2O00526 184 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 LGALS1P09382 135 aaKnown RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 RAB25P57735 213 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 FHL3Q13643 280 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 FOXB2Q5VYV0 432 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 SLC25A42Q86VD7 318 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 Q8N402 240 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 ADAD2Q8NCV1 583 aaKnown RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 MARCH1Q8TCQ1 289 aa13.16□□□□□ -0.3
CLN3-203ENST00000357806 FYTTD1Q96QD9 318 aaKnown RBP13.16□□□□□ -0.3
CLN3-203ENST00000357806 SLC2A8Q9NY64 477 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms