RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SFXN3Q9BWM7 321 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 AICDAQ9GZX7 198 aa16.65■□□□□ 0.26
CCDC88B-202ENST00000356786 A1L4Q6 167 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 IGKV3-11P04433 115 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 MAFAQ8NHW3 353 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 HEATR5BQ9P2D3 2071 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 J3QRE1 110 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 KLK10O43240 276 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 CD5P06127 495 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 CCL20P78556 96 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 GFI1BQ5VTD9 330 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 GATAD1Q8WUU5 269 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 TTTY12Q9BZ98 90 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 HBBP68871 147 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 LINC00114Q6XXX2 140 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 WDR31Q8NA23 367 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 ZDHHC16Q969W1 377 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 PMCHL2Q9BQD1 86 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 GFI1Q99684 422 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 MAP1LC3AQ9H492 121 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 TMEM106BQ9NUM4 274 aa16.64■□□□□ 0.25
CCDC88B-202ENST00000356786 DCAF10Q5QP82 559 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 ERASQ7Z444 233 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 GCSAMQ8N6F7 178 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 TRIOBPQ9H2D6 2365 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 SCO2A0A1W2PP80 73 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 IGHV3-48P01763 117 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 HTN1P15515 57 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 C19orf24Q9BVV8 132 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 RTN4RQ9BZR6 473 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 C7orf71A4D174 169 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 TFF3Q07654 80 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 CALYQ9NYX4 217 aa16.63■□□□□ 0.25
CCDC88B-202ENST00000356786 CACNA1EQ15878 2313 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 ZNF525Q8N782 197 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 CGAP01215 116 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 C10orf128Q5T292 105 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 LEAP2Q969E1 77 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 NRN1Q9NPD7 142 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 LCTP09848 1927 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 MYOFQ9NZM1 2061 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 PROB1E7EW31 1015 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 IL6RP08887 468 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 HIST3H2BBQ8N257 126 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 TCF24Q7RTU0 167 aa16.62■□□□□ 0.25
CCDC88B-202ENST00000356786 A0A1B0GV72 72 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 SH2D7A6NKC9 451 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 RBPMS2Q6ZRY4 209 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 TCF23Q7RTU1 214 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 NPIPB3Q92617 1050 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 ZNF714Q96N38 554 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 NDUFS6O75380 124 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 COX6CP09669 75 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 MBNL2Q5VZF2 373 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 CRXO43186 299 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 ZNF324BQ6AW86 544 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 PLSCR2Q9NRY7 297 aa16.61■□□□□ 0.25
CCDC88B-202ENST00000356786 PPIAL4EA0A075B759 164 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 PPIAL4DF5H284 164 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 SLC25A17O43808 307 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 PPIAL4FP0DN26 164 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 MC5RP33032 325 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 FAM117AQ9C073 453 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 PPIAL4AQ9Y536 164 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 MS4A5Q9H3V2 200 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 RLFQ13129 1914 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 FAM90A27PA6NNH2 459 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 SMIM13P0DJ93 91 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 OR4A5Q8NH83 315 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 ZNF324O75467 553 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 CD3EP07766 207 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 TMEM78Q5T7P6 136 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 GOLT1AQ6ZVE7 132 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 ASCL5Q7RTU5 278 aa16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 ARHGEF17Q96PE2 2063 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-202ENST00000356786 CXCL1P09341 107 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 GPX4P36969 197 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 TFPI2P48307 235 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 OR4D5Q8NGN0 318 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 ITLN1Q8WWA0 313 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 ZNF414Q96IQ9 312 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 SRXN1Q9BYN0 137 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 EPOPA6NHQ4 379 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 PRSS2P07478 247 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 PTGDSP41222 190 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 TTC32Q5I0X7 151 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 RAB1BQ9H0U4 201 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 C21orf140B9A014 251 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 C1QTNF9P0C862 333 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 JPT1Q9UK76 154 aa16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 TDRD6O60522 2096 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-202ENST00000356786 C1QTNF9BB2RNN3 333 aa16.58■□□□□ 0.25
CCDC88B-202ENST00000356786 PYY3Q5JQD4 70 aa16.58■□□□□ 0.25
CCDC88B-202ENST00000356786 MRPL32Q9BYC8 188 aaKnown RBP16.58■□□□□ 0.25
CCDC88B-202ENST00000356786 FCGR2BP31994 310 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 KLK15Q9H2R5 256 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 ECSCRQ19T08 205 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 FAM214BQ7L5A3 538 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 FBLN5Q9UBX5 448 aa16.58■□□□□ 0.24
CCDC88B-202ENST00000356786 AMBPP02760 352 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms