RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CACNA1BQ00975 2339 aa12.52□□□□□ -0.4
COL17A1-201ENST00000353479 TRAV30A0A087WSZ9 112 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 FREM3P0C091 2139 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 TM4SF20Q53R12 229 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 EBLN2Q6P2I7 272 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 BPIFA4PQ86YQ2 179 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 GBGT1Q8N5D6 347 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 AUP1Q9Y679 476 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 HIST1H1BP16401 226 aaKnown RBP12.52□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.52□□□□□ -0.41
COL17A1-201ENST00000353479 COL25A1Q9BXS0 654 aaPredicted RBP12.52□□□□□ -0.41
COL17A1-201ENST00000353479 Q5BKY6 102 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF738Q8NE65 137 aa12.52□□□□□ -0.41
COL17A1-201ENST00000353479 INTS1Q8N201 2190 aaKnown RBP12.52□□□□□ -0.41
COL17A1-201ENST00000353479 CA2P00918 260 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 SLC25A28Q96A46 364 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 C7orf77A4D0Y5 90 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 IGHG3P01860 377 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 NHLRC2Q8NBF2 726 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 PRSS33Q8NF86 280 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 DNAJC4Q9NNZ3 241 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 PLSCR2Q9NRY7 297 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 SLC25A15Q9Y619 301 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 TRAV24A0A0B4J272 114 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF660Q6AZW8 331 aaPredicted RBP12.51□□□□□ -0.41
COL17A1-201ENST00000353479 OR4A47Q6IF82 309 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 EEF1AKMT3Q96AZ1 226 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 TMEM78Q5T7P6 136 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 RTBDNQ9BSG5 229 aaPredicted RBP12.51□□□□□ -0.41
COL17A1-201ENST00000353479 CLDN16Q9Y5I7 305 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 IGHV3-23P01764 117 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 MGPP08493 103 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF250P15622 560 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 RIGQ13278 110 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 SH3BGRL3Q9H299 93 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 YAE1D1Q9NRH1 226 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 S4R3C0 116 aa12.51□□□□□ -0.41
COL17A1-201ENST00000353479 MBD3L4A6NDZ8 208 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-201ENST00000353479 MBD3L3A6NE82 208 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-201ENST00000353479 MBD3L5A6NJ08 208 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-201ENST00000353479 K7ENP7 123 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 STPG2Q8N412 459 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 CYB561D1Q8N8Q1 229 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 OR10J6PQ8NGY7 276 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 MBD3L2Q8NHZ7 208 aaPredicted RBP12.5□□□□□ -0.41
COL17A1-201ENST00000353479 PGPA6NDG6 321 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 B4DEV8 164 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 MOSP00540 346 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 TRGV3P03979 118 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 DHRS11Q6UWP2 260 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 TMPRSS5Q9H3S3 457 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 NDUFB4O95168 129 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 GLRX5Q86SX6 157 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 CBLN2Q8IUK8 224 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 STPG3Q8N7X2 389 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 ST6GALNAC3Q8NDV1 305 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 OR11H4Q8NGC9 324 aa12.5□□□□□ -0.41
COL17A1-201ENST00000353479 YTHDF2Q9Y5A9 579 aaKnown RBP12.5□□□□□ -0.41
COL17A1-201ENST00000353479 OR2T8A6NH00 312 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 H3BTX0 84 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF273Q14593 569 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 PRR30Q53SZ7 412 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-201ENST00000353479 MBNL2Q5VZF2 373 aaKnown RBP12.49□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF497Q6ZNH5 498 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 MYLKQ15746 1914 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 AMTP48728 403 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 HOXA4Q00056 320 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-201ENST00000353479 TMEM56-RWDD3S4R434 201 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 SAA2-SAA4A0A096LPE2 208 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 TRBV6-7A0A0A0MS04 114 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 SAA2P0DJI9 122 aaPredicted RBP12.49□□□□□ -0.41
COL17A1-201ENST00000353479 RND3P61587 244 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 NHLH1Q02575 133 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 TUSC1Q2TAM9 212 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 PQLC2Q6ZP29 291 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 OR2D3Q8NGH3 330 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 LINC00862A6NCI5 91 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 UCP1P25874 307 aa12.49□□□□□ -0.41
COL17A1-201ENST00000353479 IGKV1-12A0A0C4DH73 117 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 IGKV1D-12P01611 117 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 RAB24Q969Q5 203 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 GFI1Q99684 422 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 FANCMQ8IYD8 2048 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 ZNF672Q499Z4 452 aaPredicted RBP12.48□□□□□ -0.41
COL17A1-201ENST00000353479 WDFY1Q8IWB7 410 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 POLEQ07864 2286 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 MFSD2BA6NFX1 497 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 HLA-DRB5Q30154 266 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 FBLN5Q9UBX5 448 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 IGHV3OR16-13A0A075B7E8 117 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 IGHV3-74A0A0B4J1X5 117 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 C5orf63A6NC05 138 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 IL4P05112 153 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 ACAA1P09110 424 aaPredicted RBP12.48□□□□□ -0.41
COL17A1-201ENST00000353479 ARL14EPLP0DKL9 152 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 C8orf88P0DMB2 117 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 SPANXN1Q5VSR9 72 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 MYO7BQ6PIF6 2116 aa12.48□□□□□ -0.41
COL17A1-201ENST00000353479 A0A0A6YYD4 124 aa12.47□□□□□ -0.41
COL17A1-201ENST00000353479 IGKV1D-13A0A0B4J2D9 117 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms