RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HSBP1O75506 76 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 C1QTNF9P0C862 333 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 TPPP2P59282 170 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 PRSS8Q16651 343 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 TMEM42Q69YG0 159 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 SLC35E3Q7Z769 313 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 KIR3DL3Q8N743 410 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 C9orf106Q8NAJ2 232 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 SSC4DQ8WTU2 575 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 TMEM68Q96MH6 324 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 TMEM147Q9BVK8 224 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 WDR61Q9GZS3 305 aaKnown RBP10.02□□□□□ -0.8
USP1-201ENST00000339950 DYNLRB1Q9NP97 96 aa10.02□□□□□ -0.8
USP1-201ENST00000339950 LOC102723971A0A1B0GUV8 181 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 M0R296 226 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 DKK1O94907 266 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 RAB31Q13636 194 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 TMEM183BQ1AE95 376 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 MRGPRGQ86SM5 289 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 NEIL1Q96FI4 390 aaPredicted RBP10.02□□□□□ -0.81
USP1-201ENST00000339950 ZFHX4Q86UP3 3567 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 NAV3Q8IVL0 2385 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 IER3P46695 156 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 STUMQ69YW2 141 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 ADGRG4Q8IZF6 3080 aa10.02□□□□□ -0.81
USP1-201ENST00000339950 RRHO14718 337 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 FAM27E3Q08E93 113 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 PSG5Q15238 335 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 MOB3BQ86TA1 216 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 EDARADDQ8WWZ3 215 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 BCL2L2Q92843 193 aaPredicted RBP10.01□□□□□ -0.81
USP1-201ENST00000339950 SARAFQ96BY9 339 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 DCAF16Q9NXF7 216 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 ETV2O00321 342 aaPredicted RBP10.01□□□□□ -0.81
USP1-201ENST00000339950 IGKV1D-33P01593 117 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 IGKV1-33P01594 117 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 CD1BP29016 333 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 CAMPP49913 170 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 MLANAQ16655 118 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 DUX4L9Q6RFH8 374 aaPredicted RBP10.01□□□□□ -0.81
USP1-201ENST00000339950 STARD4Q96DR4 205 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 NAT8Q9UHE5 227 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 LINC00473A8K010 186 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 ZNF253O75346 499 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 IGHV2-70P01814 119 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 CNN1P51911 297 aaKnown RBP10.01□□□□□ -0.81
USP1-201ENST00000339950 ZNF585BQ52M93 769 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 GUCD1Q96NT3 240 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 HIST1H2BLQ99880 126 aa10.01□□□□□ -0.81
USP1-201ENST00000339950 A0A1W2PNU3 283 aaPredicted RBP10□□□□□ -0.81
USP1-201ENST00000339950 ARL14EPLP0DKL9 152 aa10□□□□□ -0.81
USP1-201ENST00000339950 CBLN1P23435 193 aa10□□□□□ -0.81
USP1-201ENST00000339950 MRPS11P82912 194 aaKnown RBP10□□□□□ -0.81
USP1-201ENST00000339950 PNRC1Q12796 327 aaPredicted RBP10□□□□□ -0.81
USP1-201ENST00000339950 FAM216BQ8N7L0 139 aa10□□□□□ -0.81
USP1-201ENST00000339950 TECRQ9NZ01 308 aaKnown RBP10□□□□□ -0.81
USP1-201ENST00000339950 OOEPA6NGQ2 149 aa10□□□□□ -0.81
USP1-201ENST00000339950 SSBP3Q9BWW4 388 aaPredicted RBP10□□□□□ -0.81
USP1-201ENST00000339950 KLF2Q9Y5W3 355 aaPredicted RBP10□□□□□ -0.81
USP1-201ENST00000339950 DYSFO75923 2080 aa10□□□□□ -0.81
USP1-201ENST00000339950 LRRC30A6NM36 301 aa10□□□□□ -0.81
USP1-201ENST00000339950 FAM157AC9JC47 383 aa10□□□□□ -0.81
USP1-201ENST00000339950 ZNF506Q5JVG8 444 aa10□□□□□ -0.81
USP1-201ENST00000339950 ZNF331Q9NQX6 463 aaPredicted RBP10□□□□□ -0.81
USP1-201ENST00000339950 RAB29O14966 203 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 SP9P0CG40 484 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 FOLR2P14207 255 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 ORM2P19652 201 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 ZNF726P1Q15940 193 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 UNQ6494/PRO21346Q6UXR6 183 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 C1QL4Q86Z23 238 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 LRTM2Q8N967 370 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 CXXC4Q9H2H0 198 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 NAGKQ9UJ70 344 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 WIPI2Q9Y4P8 454 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 IGLV3-1P01715 115 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 OR9G9P0C7N8 305 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 SPCS3P61009 180 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 HAPLN4Q86UW8 402 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 DMRTC2Q8IXT2 367 aaPredicted RBP9.99□□□□□ -0.81
USP1-201ENST00000339950 CISD2Q8N5K1 135 aaKnown RBP9.99□□□□□ -0.81
USP1-201ENST00000339950 ZPBPQ9BS86 351 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 PXMP4Q9Y6I8 212 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 MT-CO2P00403 227 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 COX7A1P24310 79 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 TNFAIP6P98066 277 aaPredicted RBP9.99□□□□□ -0.81
USP1-201ENST00000339950 SPATA31B1PQ5VZV4 182 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 HCP5Q6MZN7 132 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 DOLPP1Q86YN1 238 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 ZADH2Q8N4Q0 377 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 OR5AU1Q8NGC0 362 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 OR10X1Q8NGY0 326 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 OR4X1Q8NH49 305 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 S4R3C0 116 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 CTXND1A0A1B0GTU2 59 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 DUXBA0A1W2PPF3 345 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 SNURFLB1AK76 121 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 MLNRO43193 412 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 Q8IYB0 196 aa9.99□□□□□ -0.81
USP1-201ENST00000339950 COMMD5Q9GZQ3 224 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms