RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF716A6NP11 495 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 FOXH1O75593 365 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 Q0VG73 95 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 NIT1Q86X76 327 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM58AQ8N1B3 248 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 ST6GALNAC6Q969X2 333 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 J3QW42 95 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 SMPD2O60906 423 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 DNAJC13O75165 2243 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 HOXC12P31275 282 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 OTX2P32243 289 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 CEBPDP49716 269 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 RIPPLY3P57055 190 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 HTD2P86397 168 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 RELBQ01201 579 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 ZNF738Q8NE65 137 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 SSMEM1Q8WWF3 244 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 RNASE7Q9H1E1 156 aaKnown RBP11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 SYNGR4O95473 234 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 TFF1P04155 84 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 SRIP30626 198 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 VAMP3Q15836 100 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 MRPL54Q6P161 138 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 DOLPP1Q86YN1 238 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 SLC25A45Q8N413 288 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 CORO2AQ92828 525 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 GMPPAQ96IJ6 420 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 OR2D2Q9H210 308 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 C19orf25Q9UFG5 118 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 ZNF391Q9UJN7 358 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 PTPRZ1P23471 2315 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 DSCR4P56555 118 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 SH3BGRL2Q9UJC5 107 aa11.23□□□□□ -0.61
CCDC88C-201ENST00000331194 SPATA46Q5T0L3 261 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 PLPPR2Q96GM1 343 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 CLEC7AQ9BXN2 247 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 CUL9Q8IWT3 2517 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 RFPL3SP0C7P2 107 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 CD1BP29016 333 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 VASH2Q86V25 355 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 ZFHX2Q9C0A1 2572 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 C15orf62A8K5M9 175 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 C17orf112F2Z3M2 114 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 CA2P00918 260 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 FKBP2P26885 142 aaKnown RBP11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 RAC3P60763 192 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 RPEL1Q2QD12 228 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 OCIAD2Q56VL3 154 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 OR52L2PQ8NGH6 319 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 ZC2HC1AQ96GY0 325 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 SELENOKQ9Y6D0 94 aa11.22□□□□□ -0.61
CCDC88C-201ENST00000331194 IGHV2OR16-5A0A0B4J2B6 119 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A26D6RGX4 464 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 CA1P00915 261 aaPredicted RBP11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 ARF1P84077 181 aaKnown RBP11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 TMEM108Q6UXF1 575 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 CST9LQ9H4G1 147 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 SIT1Q9Y3P8 196 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 V9GYV3 84 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 HCFC1P51610 2035 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 TECTAO75443 2155 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 PRR14LQ5THK1 2151 aa11.21□□□□□ -0.61
CCDC88C-201ENST00000331194 TOMM40O96008 361 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 PRRX1P54821 245 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 Q56UQ5 140 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 Q6P435 159 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 COLCA1Q6ZS62 124 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 LHFPL4Q7Z7J7 247 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 WFDC8Q8IUA0 241 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 TSKUQ8WUA8 353 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 KCNS1Q96KK3 526 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 SFXN3Q9BWM7 321 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 PRDM14Q9GZV8 571 aa11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF430Q9H8G1 570 aaPredicted RBP11.21□□□□□ -0.62
CCDC88C-201ENST00000331194 ZNF324O75467 553 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 OR2H2O95918 312 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 CD27P26842 260 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 PCBD1P61457 104 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 GGNQ86UU5 652 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 OR10D3Q8NH80 312 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 MAFAQ8NHW3 353 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 BET1LQ9NYM9 111 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 IL19Q9UHD0 177 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 DEFB108AA8MXU0 73 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 PATE3B3GLJ2 98 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 IGLV3-19P01714 112 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 GLB1P16278 677 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 MRPL49Q13405 166 aaKnown RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 WIPI1Q5MNZ9 446 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 BCL2L2Q92843 193 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 EAF1Q96JC9 268 aaPredicted RBP11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 WDR83OSQ9Y284 106 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV3-43A0A0B4J1X8 118 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV2-70DA0A0C4DH43 119 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 BMPR1BO00238 502 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 P0C879 139 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 IGHV3-43DP0DP04 118 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 TMEM136Q6ZRR5 245 aa11.2□□□□□ -0.62
CCDC88C-201ENST00000331194 H2BFWTQ7Z2G1 175 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms