RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CHODLQ9H9P2 273 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 HMGA1P17096 107 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 LINC01587Q99440 93 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 KLK2P20151 261 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 TMPRSS3P57727 454 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 ISXQ2M1V0 245 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 LINC01559Q495D7 138 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 CCL19Q99731 98 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 CALYQ9NYX4 217 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 HCSTQ9UBK5 93 aa12.01□□□□□ -0.49
CCDC88A-201ENST00000263630 LRP6O75581 1613 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 GRIFINA4D1Z8 144 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 LDLRAD4O15165 306 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 F12P00748 615 aaPredicted RBP12□□□□□ -0.49
CCDC88A-201ENST00000263630 ZFP36L2P47974 494 aaKnown RBP12□□□□□ -0.49
CCDC88A-201ENST00000263630 MARCH11A6NNE9 402 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 SPINT1O43278 529 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 HSPE1P61604 102 aaKnown RBP12□□□□□ -0.49
CCDC88A-201ENST00000263630 ITGB4P16144 1822 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 KCPQ6ZWJ8 1503 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 WNT10AQ9GZT5 417 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 LOC390937A0A1W2PQ73 354 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 BGLAPP02818 100 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 RASL10BQ96S79 203 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 R4GN57 208 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 DPM2O94777 84 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 GAGE13Q4V321 117 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 SUMO4Q6EEV6 95 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 TRAV24A0A0B4J272 114 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 CRYGNQ8WXF5 182 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 MED12Q93074 2177 aa12□□□□□ -0.49
CCDC88A-201ENST00000263630 RUNX1Q01196 453 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 KIAA1644Q3SXP7 199 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM186Q96B77 213 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CITED1Q99966 193 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 SPTA1P02549 2419 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A10PA6NDY2 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A18PA6NE21 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A16PA6NEW6 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A20PA6NIJ5 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A8PA6NJQ4 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A7PA6NKC0 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A22PA8MWA6 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A12PA8MX19 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A5PA8MXJ8 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A23PA8MXZ1 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A15PP0C7V4 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A13PP0C7W8 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A14PP0C7W9 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FAM90A24PP0C7X0 464 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM155Q4W5P6 130 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CT83Q5H943 113 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 RPRMQ9NS64 109 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 FOXH1O75593 365 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 LEPP41159 167 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 SRSF1Q07955 248 aaKnown RBP eCLIP11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 C1orf210Q8IVY1 113 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CRYBG1Q9Y4K1 1723 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CIARTQ8N365 385 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 ST20Q9HBF5 79 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM238C9JI98 176 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 SSBP2P81877 361 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 GPR146Q96CH1 333 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 SPANXDQ9BXN6 97 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 LOC105371242A0A075B767 164 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 TSPAN7P41732 249 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 HAPLN4Q86UW8 402 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CCL13Q99616 98 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 CLEC7AQ9BXN2 247 aa11.99□□□□□ -0.49
CCDC88A-201ENST00000263630 IL36BQ9NZH7 164 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 PTGDSP41222 190 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 PDLIM4P50479 330 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 GATAD1Q8WUU5 269 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 TNFRSF6BO95407 300 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 SNRPCP09234 159 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 GTSCR1Q86UQ5 136 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM252Q8N6L7 170 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 TAF1P21675 1872 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 A0A1W2PPE3 182 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ZNF250P15622 560 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 UCP2P55851 309 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 MYOD1P15172 320 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 CBLN1P23435 193 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 FGFRL1Q8N441 504 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 COQ2Q96H96 371 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 KLF12Q9Y4X4 402 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 RNASE4P34096 147 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ERG28Q9UKR5 140 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ITGB1BP1O14713 200 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ORMDL2Q53FV1 153 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 SMIM8Q96KF7 97 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ASB1Q9Y576 335 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 H3BUT2 72 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 IL6RP08887 468 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 TMEM91Q6ZNR0 172 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 ATG4DQ86TL0 474 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 GATD1Q8NB37 220 aa11.98□□□□□ -0.49
CCDC88A-201ENST00000263630 IGHV1OR21-1A0A087WYE8 117 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 PQLC2LA1A4F0 135 aa11.97□□□□□ -0.49
CCDC88A-201ENST00000263630 CCL8P80075 99 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms