RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LEAP2Q969E1 77 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 DMRT1Q9Y5R6 373 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 RALGAPA2Q2PPJ7 1873 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 SPTAN1Q13813 2472 aaKnown RBP9.14□□□□□ -0.95
CD44-201ENST00000263398 POLEQ07864 2286 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 WNK2Q9Y3S1 2297 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 GCHFRP30047 84 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 TMEM177Q53S58 311 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 DNM1P46Q6ZS02 220 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 CYP2G1PQ6ZSU1 146 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 FLVCR1-AS1Q8TAF5 88 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 MRPL32Q9BYC8 188 aaKnown RBP9.14□□□□□ -0.95
CD44-201ENST00000263398 UQCR10Q9UDW1 63 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 ZNF646O15015 1829 aaPredicted RBP9.14□□□□□ -0.95
CD44-201ENST00000263398 TRBV9A0A0B4J1U6 114 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 FXYD3Q14802 87 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 STPG3Q8N7X2 389 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 PATJQ8NI35 1801 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 NBASA2RRP1 2371 aa9.14□□□□□ -0.95
CD44-201ENST00000263398 LOC389332A0A1B0GUA5 103 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 C5orf52A6NGY3 159 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 AMY1AP04745 511 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 FAM106CPP0CH98 169 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 SRIP30626 198 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 MRPL14Q6P1L8 145 aaKnown RBP9.13□□□□□ -0.95
CD44-201ENST00000263398 VKORC1L1Q8N0U8 176 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 SFRP2Q96HF1 295 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 LPAR2Q9HBW0 351 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 AP5S1Q9NUS5 200 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 CHD5Q8TDI0 1954 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 TRAV30A0A087WSZ9 112 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 PRR32B1ATL7 298 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 K7ERU9 68 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 SRP19P09132 144 aaKnown RBP9.13□□□□□ -0.95
CD44-201ENST00000263398 CKS2P33552 79 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 MFAP4P55083 255 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 TWIST1Q15672 202 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 C12orf54Q6X4T0 127 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 NPIPB3Q92617 1050 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 GGACTQ9BVM4 153 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 WNT9BO14905 357 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 STAG3L2P0CL84 134 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 ID1P41134 155 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 LCN2P80188 198 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 SPATA45Q537H7 98 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 LY6G6FQ5SQ64 297 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 ZNRF1Q8ND25 227 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 ZNF837Q96EG3 531 aaPredicted RBP9.13□□□□□ -0.95
CD44-201ENST00000263398 SIGLEC12Q96PQ1 595 aa9.13□□□□□ -0.95
CD44-201ENST00000263398 EGR1P18146 543 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 MAS1LP35410 378 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 KIAA1644Q3SXP7 199 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 NPCDR1Q9BY65 106 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 NMUP48645 174 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 LOXL3P58215 753 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 ATP1A1-AS1Q5TC04 95 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 ATRAIDQ6UW56 229 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 ACP7Q6ZNF0 438 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 SLC25A28Q96A46 364 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 RNF126Q9BV68 326 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 NYNRINQ9P2P1 1898 aaKnown RBP9.12□□□□□ -0.95
CD44-201ENST00000263398 CELA3AP09093 270 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 SFTPCP11686 197 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 HTN1P15515 57 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 FCGR2BP31994 310 aaPredicted RBP9.12□□□□□ -0.95
CD44-201ENST00000263398 LTBRP36941 435 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 TIMM23BQ5SRD1 257 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 PPIAL4CA0A0B4J2A2 164 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 ZNF207O43670 478 aaKnown RBP9.12□□□□□ -0.95
CD44-201ENST00000263398 SP9P0CG40 484 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 PPIAL4GP0DN37 164 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 TMEM56-RWDD3S4R434 201 aa9.12□□□□□ -0.95
CD44-201ENST00000263398 IGKV1-9A0A0C4DH69 117 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 PROB1E7EW31 1015 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 RRHO14718 337 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 CA2P00918 260 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 ZNF883P0CG24 379 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 FOLR2P14207 255 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 CCL1P22362 96 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 BIVMQ86UB2 503 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 TMEM183AQ8IXX5 376 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 FAM89BQ8N5H3 189 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 DOCK4Q8N1I0 1966 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 A0A087WV48 116 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 RPS20P60866 119 aaKnown RBP9.11□□□□□ -0.95
CD44-201ENST00000263398 OSR1Q8TAX0 266 aaPredicted RBP9.11□□□□□ -0.95
CD44-201ENST00000263398 PGLYRP4Q96LB8 373 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 METTL26Q96S19 204 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 FOXJ2Q9P0K8 574 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 MRPS18CQ9Y3D5 142 aaKnown RBP9.11□□□□□ -0.95
CD44-201ENST00000263398 TRPM7Q96QT4 1865 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 IGLV3-32A0A0A0MS00 114 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 TCF21O43680 179 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 CECR9P0C854 216 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 MPZP25189 248 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 CENPWQ5EE01 88 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 UNQ5815/PRO19632Q6UWF5 114 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 ZNF841Q6ZN19 808 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 WFDC3Q8IUB2 231 aa9.11□□□□□ -0.95
CD44-201ENST00000263398 SRSF12Q8WXF0 261 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms