RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LSM10Q969L4 123 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 C7orf69Q9H7B7 122 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 WDR54Q9H977 334 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PTP4A3O75365 173 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SRSF10O75494 262 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DUSP2Q05923 314 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 C8orf86Q6ZUL3 223 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR2Y1Q8NGV0 311 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLAMF6Q96DU3 332 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SIGLEC12Q96PQ1 595 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM126AQ9H061 195 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 NTMQ9P121 344 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 KBTBD11-OT1A0A1B0GTJ5 212 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FCN3O75636 299 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TEAD1P28347 426 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PITX1P78337 314 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PWWP2BQ6NUJ5 590 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 Q7L0L9 218 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS45Q7RTY3 260 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 A0A0G2JMZ2 1700 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LRRC37A2A6NM11 1700 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LRRC37AA6NMS7 1700 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 NKX2-8O15522 239 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ESDP10768 282 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM33P57088 247 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CCL14Q16627 93 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM177Q53S58 311 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LRP10Q7Z4F1 713 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FGFBP3Q8TAT2 258 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 DSCR8Q96T75 97 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CHST6Q9GZX3 395 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C20orf141Q9NUB4 165 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C9JQL5 133 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 RAMP3O60896 148 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SP9P0CG40 484 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ARL14EPLP0DKL9 152 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 COX5BP10606 129 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FBLN7Q53RD9 439 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM91Q6ZNR0 172 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LYG1Q8N1E2 194 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 OR5C1Q8NGR4 320 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C16orf52Q8NHV5 167 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MYEOVQ96EZ4 313 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MYBPHLA2RUH7 354 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PYCARD-AS1I3L0S3 204 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 J3QLI3 93 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 EML2O95834 649 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 MGPP08493 103 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CSRP1P21291 193 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ISL1P61371 349 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SELENOTP62341 195 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GPNMBQ14956 572 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PCOLCEQ15113 449 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FAM71CQ8NEG0 241 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 DEFB108BQ8NET1 73 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 OR1F12Q8NHA8 337 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 VAX2Q9UIW0 290 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TRBV9A0A0B4J1U6 114 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV2A0A0B4J234 112 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TRBV7-9A0A0J9YWB2 115 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PLPP2O43688 288 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CXorf1O96002 111 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GYPBP06028 91 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 HLA-GP17693 338 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 COL8A1P27658 744 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 HOXD9P28356 352 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SELENOPP49908 381 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ZP1P60852 638 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LGALSLQ3ZCW2 172 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 GGTA1PQ4G0N0 100 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SLC35E3Q7Z769 313 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 NKAIN4Q8IVV8 208 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FDCSPQ8NFU4 85 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 R4GN57 208 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LOC107986453A0A1B0GWG9 222 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PGPEP1LA6NFU8 196 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 CST7O76096 145 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 DCTDP32321 178 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 RPL31P62899 125 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 C14orf177Q52M58 125 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 OSR2Q8N2R0 312 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 HMGCLL1Q8TB92 370 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A2Q9BXI2 301 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 PARLQ9H300 379 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FSCN3Q9NQT6 498 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 WBP1LQ9NX94 342 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LAMTOR3Q9UHA4 124 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FLNAP21333 2647 aaKnown RBP2.42□□□□□ -2.02
SCN1A-219ENST00000641575 LOC105371242A0A075B767 164 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TRAV8-1A0A0A6YYK1 113 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 B4DSR2 109 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 FRS3O43559 492 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF83P51522 516 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SYT14P1Q58G82 188 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TSPO2Q5TGU0 170 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SHISA6Q6ZSJ9 500 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 ODF3L1Q8IXM7 274 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 OR4D11Q8NGI4 311 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM167AQ8TBQ9 72 aa2.42□□□□□ -2.02
SCN1A-219ENST00000641575 SMIM4Q8WVI0 70 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms