RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 DEFB121Q5J5C9 76 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CGB2Q6NT52 195 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.24□□□□□ -1.572e-6■■□□□ 12
SCN1A-212ENST00000636194 MDS2Q8NDY4 140 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 MZB1Q8WU39 189 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 C5P01031 1676 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 PLXNB3Q9ULL4 1909 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 HMGN4O00479 90 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CTSVO60911 334 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CD5P06127 495 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ESDP10768 282 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 C1orf53Q5VUE5 145 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ARPC1AQ92747 370 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 DLX4Q92988 240 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SDHCQ99643 169 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 HMSDA8MTL9 139 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 NDUFC2O95298 119 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CDAP32320 146 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SNRPEP62304 92 aaKnown RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 UBE2V2Q15819 145 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SP6Q3SY56 376 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM155Q4W5P6 130 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 OR10W1Q8NGF6 305 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 NDUFAF3Q9BU61 184 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 RPRMQ9NS64 109 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ARFGEF1Q9Y6D6 1849 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ABCA3Q99758 1704 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 TRGV4A0A0C4DH28 118 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 C7orf77A4D0Y5 90 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ISG15P05161 165 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SOX8P57073 446 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 LINC00158P58513 81 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 PPP1R1AQ13522 171 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 COX20Q5RI15 118 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 POC1AQ8NBT0 407 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SIGLEC11Q96RL6 698 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SF3B5Q9BWJ5 86 aaKnown RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 FOXQ1Q9C009 403 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 MPC2O95563 127 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 NCR2O95944 276 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ADMP35318 185 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 SEC11AP67812 179 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CD69Q07108 199 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 CELF2-AS1Q8N7Q2 184 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 DEFB124Q8NES8 71 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 MARS2Q96GW9 593 aaKnown RBP5.24□□□□□ -1.57
SCN1A-212ENST00000636194 VSTM2LQ96N03 204 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 ATOH8Q96SQ7 321 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 TBC1D29Q9UFV1 150 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 V9GYH0 126 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 KNDC1Q76NI1 1749 aa5.24□□□□□ -1.57
SCN1A-212ENST00000636194 HMX2A2RU54 273 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ZBTB42B2RXF5 422 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 M0R2P5 195 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TAPBPO15533 448 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 IGHV3-13P01766 116 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 IGHV3-7P01780 117 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 LSM6P62312 80 aaKnown RBP5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TIMM23BQ5SRD1 257 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 BIVMQ86UB2 503 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 OR51G1Q8NGK1 321 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 F8P00451 2351 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 WNT7AO00755 349 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 SFT2D2O95562 160 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 MMP9P14780 707 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 HOXD13P35453 343 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 PGLYRP4Q96LB8 373 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 RNF167Q9H6Y7 350 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 SPANXCQ9NY87 97 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 CLEC2DQ9UHP7 191 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 A0A1W2PPI3 338 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ZNF32P17041 273 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 CRYBB2P43320 205 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 FOXA1P55317 472 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ID3Q02535 119 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ANKRD29Q8N6D5 301 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 OR11H4Q8NGC9 324 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM167AQ8TBQ9 72 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 CHAC1Q9BUX1 264 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 MRPL32Q9BYC8 188 aaKnown RBP5.23□□□□□ -1.57
SCN1A-212ENST00000636194 PLSCR2Q9NRY7 297 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 DENND4CQ5VZ89 1909 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ODAMA1E959 279 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM229AB2RXF0 380 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 HTR6P50406 440 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 GAGE2BQ13066 116 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 LINC01559Q495D7 138 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 SLC25A53Q5H9E4 307 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 OR13A1Q8NGR1 328 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TMEM190Q8WZ59 177 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 RMI2Q96E14 147 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 KCNS1Q96KK3 526 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TRAV9-2A0A087WT02 112 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TEX48A0A1B0GUV7 120 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 A0A1B0GV90 55 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 TM4SF1P30408 202 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 VDAC2P45880 294 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-212ENST00000636194 FOXF1Q12946 379 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 WDTC1Q8N5D0 677 aa5.23□□□□□ -1.57
SCN1A-212ENST00000636194 ZIC5Q96T25 663 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms