RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CCDC144NLQ6NUI1 221 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SCNM1Q9BWG6 230 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 CISD1Q9NZ45 108 aaKnown RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 PDCD11Q14690 1871 aaKnown RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 NPIPB7O75200 414 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 UCP1P25874 307 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 CRYBB3P26998 211 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 CDX1P47902 265 aaPredicted RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 FXYD3Q14802 87 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 SCGB1D4Q6XE38 83 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 WDR31Q8NA23 367 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 LILRB1Q8NHL6 650 aaPredicted RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 MRPL13Q9BYD1 178 aaKnown RBP11.94□□□□□ -0.5
CPSF1-212ENST00000616140 UBTD1Q9HAC8 227 aa11.94□□□□□ -0.5
CPSF1-212ENST00000616140 KBTBD11O94819 623 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 MESP1Q9BRJ9 268 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 SLC25A33Q9BSK2 321 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 JPT1Q9UK76 154 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 J3QRE1 110 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 HTN1P15515 57 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 FAM209BQ5JX69 171 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 DGAT2L7PQ6IED9 249 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 OR5R1Q8NH85 324 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 SGK494Q96LW2 274 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 OR51M1Q9H341 326 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 HSPB8Q9UJY1 196 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 SH2D7A6NKC9 451 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-212ENST00000616140 IGLV3-19P01714 112 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF735P0CB33 412 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 NAT2P11245 290 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 GPR6P46095 362 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-212ENST00000616140 NUBP1P53384 320 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 LRRC75BQ2VPJ9 315 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 WFIKKN1Q96NZ8 548 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 LINC00470Q9BZP3 86 aa11.93□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF430Q9H8G1 570 aaPredicted RBP11.93□□□□□ -0.5
CPSF1-212ENST00000616140 C12orf77C9JDV5 145 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 C8orf88P0DMB2 117 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 RPL13AP40429 203 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 KRTCAP3Q53RY4 240 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 DPF1Q92782 380 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 DIRC2Q96SL1 478 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 QTRT1Q9BXR0 403 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 TMEM250H0YL14 139 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 HLA-DQA1P01909 254 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 LY6G6FQ5SQ64 297 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 LOXL4Q96JB6 756 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 PSMG3Q9BT73 122 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF703Q9H7S9 590 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 DNAJC4Q9NNZ3 241 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 FOXJ2Q9P0K8 574 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 IGKV1-9A0A0C4DH69 117 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 IFITM10A6NMD0 228 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 ERVFRD-1P60508 538 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 HOXA4Q00056 320 aaPredicted RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 Q6ZT83 130 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 IMMP1LQ96LU5 166 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 METTL1Q9UBP6 276 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 KCNMB2Q9Y691 235 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 NYNRINQ9P2P1 1898 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 A0A0G2JMM0 328 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 A0A1W2PPB8 328 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 A0A1W2PRS3 328 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 KIR3DP1A8MWS1 328 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 SSX8Q7RTT4 187 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 PATJQ8NI35 1801 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 RBM14Q96PK6 669 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 IDI2-AS1Q9NZ38 188 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 RABAC1Q9UI14 185 aa11.92□□□□□ -0.5
CPSF1-212ENST00000616140 CARHSP1Q9Y2V2 147 aaKnown RBP11.92□□□□□ -0.5
CPSF1-212ENST00000616140 RPLP1P05386 114 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 TCTAP57738 103 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 REPIN1Q9BWE0 567 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 MRPL18Q9H0U6 180 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 ZDHHC8Q9ULC8 765 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 PHF3Q92576 2039 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF646O15015 1829 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 HEATR1Q9H583 2144 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 LOC389332A0A1B0GUA5 103 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 LBHQ53QV2 105 aaPredicted RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 BPIFA4PQ86YQ2 179 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 OR4A5Q8NH83 315 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 SPSB4Q96A44 273 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 MRPL37Q9BZE1 423 aaKnown RBP11.91□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF319Q9P2F9 582 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 ZNF407Q9C0G0 2248 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 LNP1A1A4G5 178 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 H3BTX0 84 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 CTSSP25774 331 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 RELBQ01201 579 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 SPANXN1Q5VSR9 72 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 MUC15Q8N387 334 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 FDCSPQ8NFU4 85 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 NABP2Q9BQ15 211 aa11.91□□□□□ -0.5
CPSF1-212ENST00000616140 GCGP01275 180 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 MST1P26927 711 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 TRBV23-1A0A0A0MS06 115 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 GRIFINA4D1Z8 144 aa11.9□□□□□ -0.5
CPSF1-212ENST00000616140 J3QW42 95 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms