RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 PFDN5Q99471 154 aa16.77■□□□□ 0.28
SHKBP1-225ENST00000600733 PCGF1Q9BSM1 259 aa16.77■□□□□ 0.28
SHKBP1-225ENST00000600733 PLSCR4Q9NRQ2 329 aa16.77■□□□□ 0.28
SHKBP1-225ENST00000600733 PITPNC1Q9UKF7 332 aa16.77■□□□□ 0.28
SHKBP1-225ENST00000600733 WDR83OSQ9Y284 106 aa16.77■□□□□ 0.28
SHKBP1-225ENST00000600733 A0A1W2PPQ1 181 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 ZNF729A6NN14 1252 aaPredicted RBP16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 TNFSF13O75888 250 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 IFNA10P01566 189 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 ZNF134P52741 427 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 UBE2G2P60604 165 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 ZNRF1Q8ND25 227 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 SARAFQ96BY9 339 aa16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 ZNF71Q9NQZ8 489 aaPredicted RBP16.77■□□□□ 0.27
SHKBP1-225ENST00000600733 HPRT1P00492 218 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 HIST1H1BP16401 226 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 UTF1Q5T230 341 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 TRAT1Q6PIZ9 186 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 TRAV3A0A0B4J244 114 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 SRRM5B3KS81 715 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 PPP5D1E7EU14 171 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 RRHO14718 337 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 HRASP01112 189 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 PAX5Q02548 391 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 FAM90A1Q86YD7 464 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 OR4A16Q8NH70 328 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 STARD4Q96DR4 205 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 MEGF10Q96KG7 1140 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 DIRC2Q96SL1 478 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 PATZ1Q9HBE1 687 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 TUBG2Q9NRH3 451 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 AURKAIP1Q9NWT8 199 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 DKK4Q9UBT3 224 aa16.76■□□□□ 0.27
SHKBP1-225ENST00000600733 CACNA1HO95180 2353 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 GALR2O43603 387 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 ATP5G3P48201 142 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 GAMTQ14353 236 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 TRAV17A0A0B4J275 112 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 A0A1B0GWJ7 208 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 LOXL3P58215 753 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 BHLHA15Q7RTS1 189 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 GCSAMQ8N6F7 178 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 HEYLQ9NQ87 328 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 JPT1Q9UK76 154 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 EP300Q09472 2414 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 DMXL1Q9Y485 3027 aa16.75■□□□□ 0.27
SHKBP1-225ENST00000600733 ICE1Q9Y2F5 2266 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 CD82P27701 267 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 SPCS3P61009 180 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 P2RY6Q15077 328 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 AARDQ4LEZ3 155 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 CST9LP1Q5W188 147 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 IGFL2Q6UWQ7 119 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 C1orf229Q6ZS94 237 aaPredicted RBP16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 TGIF2LYQ8IUE0 185 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 LURAP1LQ8IV03 231 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 TMEM183AQ8IXX5 376 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 LEAP2Q969E1 77 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 DERL1Q9BUN8 251 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 GFOD1Q9NXC2 390 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 PROCRQ9UNN8 238 aa16.74■□□□□ 0.27
SHKBP1-225ENST00000600733 SLC31A2O15432 143 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 CHRNA7P36544 502 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 GNB1P62873 340 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 TREML4Q6UXN2 200 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 ABHD12Q8N2K0 398 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 ANAPC16Q96DE5 110 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 IFI27L2Q9H2X8 130 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 MGST3O14880 152 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 CGAP01215 116 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 ZNF83P51522 516 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 SDSLQ96GA7 329 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 OR2V2Q96R30 315 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 SLC25A15Q9Y619 301 aa16.73■□□□□ 0.27
SHKBP1-225ENST00000600733 A0A1W2PPV4 95 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 YPEL1O60688 119 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 VDAC2P45880 294 aaPredicted RBP16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 MOGAT3Q86VF5 341 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 TMEM170AQ8WVE7 144 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 YPEL2Q96QA6 119 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 MS4A5Q9H3V2 200 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 GFRA3O60609 400 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 NDUFB4O95168 129 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 VENTXO95231 258 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 SELLP14151 372 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 RELBQ01201 579 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 MZT1Q08AG7 82 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 FAM201AQ5SY85 155 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 SEM1Q6ZVN7 128 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 OR1P1Q8NH06 330 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 S100PBPQ96BU1 408 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 MGST2Q99735 147 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 TMEM140Q9NV12 185 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 DSCAMO60469 2012 aa16.72■□□□□ 0.27
SHKBP1-225ENST00000600733 XKRY2A2RUG3 117 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 PRSS46E5RG02 174 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 LY86O95711 162 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 ERVK-16P61578 105 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 MIC13Q5XKP0 118 aa16.71■□□□□ 0.27
SHKBP1-225ENST00000600733 LINC01551Q86U37 167 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms