RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 HLA-DMAP28067 261 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 HRH1P35367 487 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 RPL5P46777 297 aaKnown RBP12.21□□□□□ -0.45
LIG3-215ENST00000592690 HERV-K104P61576 105 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 MSMO1Q15800 293 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 RNASE12Q5GAN4 147 aaKnown RBP12.21□□□□□ -0.45
LIG3-215ENST00000592690 ZNF818PQ6ZRF7 136 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 VKORC1L1Q8N0U8 176 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 TEX45Q8NA69 505 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 OR5M8Q8NGP6 311 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 OR4S2Q8NH73 311 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 OR5B12Q96R08 314 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 MIXL1Q9H2W2 232 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 EXTL2Q9UBQ6 330 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 ADAM30Q9UKF2 790 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 VSIG4Q9Y279 399 aa12.21□□□□□ -0.45
LIG3-215ENST00000592690 DNAH3Q8TD57 4116 aa12.21□□□□□ -0.46
LIG3-215ENST00000592690 PRKDCP78527 4128 aaKnown RBP12.2□□□□□ -0.46
LIG3-215ENST00000592690 I3L521 148 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 TMBIM6P55061 237 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 RAB25P57735 213 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 TNXAQ16473 311 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 PRSS8Q16651 343 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 ASPHD1Q5U4P2 390 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 FOXB2Q5VYV0 432 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 DHRS11Q6UWP2 260 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 MOB3AQ96BX8 217 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 MS4A10Q96PG2 267 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 ZNF2Q9BSG1 426 aaPredicted RBP12.2□□□□□ -0.46
LIG3-215ENST00000592690 FXYD6Q9H0Q3 95 aa12.2□□□□□ -0.46
LIG3-215ENST00000592690 ZNF430Q9H8G1 570 aaPredicted RBP12.2□□□□□ -0.46
LIG3-215ENST00000592690 SULT1C2O00338 296 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 CTDSP2O14595 271 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 RAMP3O60896 148 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 APELAP0DMC3 54 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 RCVRNP35243 200 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 FHL3Q13643 280 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 PYHIN1Q6K0P9 492 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 LAX1Q8IWV1 398 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 ZBTB34Q8NCN2 500 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 OR5T1Q8NG75 326 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 OR11H1Q8NG94 326 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 DYNC2LI1Q8TCX1 351 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 BCL7BQ9BQE9 202 aa12.19□□□□□ -0.46
LIG3-215ENST00000592690 ALX4Q9H161 411 aaPredicted RBP12.19□□□□□ -0.46
LIG3-215ENST00000592690 RGS5O15539 181 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 DUS4LO95620 317 aaKnown RBP12.18□□□□□ -0.46
LIG3-215ENST00000592690 GNRHRP30968 328 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 KIR2DS2P43631 304 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 TPPP2P59282 170 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 RUNX1Q01196 453 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 C10orf55Q5SWW7 151 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 SPAG16Q8N0X2 631 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 OR51H1Q8NH63 302 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 SRSF12Q8WXF0 261 aaKnown RBP12.18□□□□□ -0.46
LIG3-215ENST00000592690 ABHD1Q96SE0 405 aa12.18□□□□□ -0.46
LIG3-215ENST00000592690 CCDC59Q9P031 241 aaKnown RBP12.18□□□□□ -0.46
LIG3-215ENST00000592690 MSGN1A6NI15 193 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 H3BMQ9 156 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 KBTBD11O94819 623 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 IGHV3-11P01762 117 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 TRGV3P03979 118 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 CATR1Q13166 79 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 AADACL3Q5VUY0 350 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 SSX9Q7RTT3 188 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 MMD2Q8IY49 270 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 PUSL1Q8N0Z8 303 aaKnown RBP12.17□□□□□ -0.46
LIG3-215ENST00000592690 POC5Q8NA72 575 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 OR1N2Q8NGR9 330 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 OR6F1Q8NGZ6 308 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 OR52I2Q8NH67 350 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 ISOC1Q96CN7 298 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 RHOVQ96L33 236 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 PHB2Q99623 299 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 SLA2Q9H6Q3 261 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 ZNF355PQ9NSJ1 428 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 KLK11Q9UBX7 282 aa12.17□□□□□ -0.46
LIG3-215ENST00000592690 M0QYG6 137 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 CREBL2O60519 120 aaPredicted RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 NOL3O60936 208 aaKnown RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 OR2A4O95047 310 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 RLN1P04808 185 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 LGALS1P09382 135 aaKnown RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 DEFA5Q01523 94 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 ZNF616Q08AN1 781 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 TMEM167AQ8TBQ9 72 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 TMEM68Q96MH6 324 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 OR2A7Q96R45 310 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 MCRIP2Q9BUT9 160 aaKnown RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 AURKAIP1Q9NWT8 199 aaPredicted RBP12.16□□□□□ -0.46
LIG3-215ENST00000592690 SCOCQ9UIL1 159 aa12.16□□□□□ -0.46
LIG3-215ENST00000592690 IGHV4OR15-8A0A075B7B6 117 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 A0A087WW49 117 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 H3BUA1 57 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 RBFOX2O43251 390 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIG3-215ENST00000592690 HRASP01112 189 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 CD40LGP29965 261 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 KRTAP10-11P60412 298 aa12.15□□□□□ -0.46
LIG3-215ENST00000592690 TSPAN5P62079 268 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms