RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 HLA-DMAP28067 261 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 RFX2P48378 723 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 ZNF616Q08AN1 781 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 PJVKQ0ZLH3 352 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 CTF1Q16619 201 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 BEAN1Q3B7T3 259 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 LPCAT3Q6P1A2 487 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 IDO2Q6ZQW0 420 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 ZNF491Q8N8L2 437 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 CD300LFQ8TDQ1 290 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 RAB2BQ8WUD1 216 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 SPIN2AQ99865 258 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 SPIN2BQ9BPZ2 258 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 ZNF2Q9BSG1 426 aaPredicted RBP8.5□□□□□ -1.05
CLIP3-203ENST00000586457 NAA50Q9GZZ1 169 aaKnown RBP8.5□□□□□ -1.05
CLIP3-203ENST00000586457 TRRAPQ9Y4A5 3859 aa8.5□□□□□ -1.05
CLIP3-203ENST00000586457 CCDC160A6NGH7 325 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SULT1C2O00338 296 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 WIPF1O43516 503 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 OR2A4O95047 310 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 IGLV2-23P01705 113 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 RCVRNP35243 200 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 RPL5P46777 297 aaKnown RBP8.49□□□□□ -1.05
CLIP3-203ENST00000586457 DYRK1AQ13627 763 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 MSMO1Q15800 293 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 PRSS8Q16651 343 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 DEFB121Q5J5C9 76 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 AADACL3Q5VUY0 350 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 FOXB2Q5VYV0 432 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SLC25A42Q86VD7 318 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SPAG16Q8N0X2 631 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 MRAPQ8TCY5 172 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 CASTOR1Q8WTX7 329 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 FCAMRQ8WWV6 532 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 DDB2Q92466 427 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SNAPC3Q92966 411 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 OR2A7Q96R45 310 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 HRASLSQ9HDD0 168 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 TPSG1Q9NRR2 321 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 EXTL2Q9UBQ6 330 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SCOCQ9UIL1 159 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 FBXO7Q9Y3I1 522 aa8.49□□□□□ -1.05
CLIP3-203ENST00000586457 SRRM4A7MD48 611 aaKnown RBP8.48□□□□□ -1.05
CLIP3-203ENST00000586457 SEC14L6B5MCN3 397 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 H3BUA1 57 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 IGHV3-11P01762 117 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 PRB2P02812 416 aaPredicted RBP8.48□□□□□ -1.05
CLIP3-203ENST00000586457 APELAP0DMC3 54 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 HRH1P35367 487 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 ALDH3B2P48448 385 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 CRIP2P52943 208 aaPredicted RBP8.48□□□□□ -1.05
CLIP3-203ENST00000586457 TMBIM6P55061 237 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 ERVK-16P61578 105 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 RPL30P62888 115 aaKnown RBP8.48□□□□□ -1.05
CLIP3-203ENST00000586457 NDPQ00604 133 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 KPRPQ5T749 579 aaPredicted RBP8.48□□□□□ -1.05
CLIP3-203ENST00000586457 C9orf66Q5T8R8 295 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 DHRS11Q6UWP2 260 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 SSX9Q7RTT3 188 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 OVCH2Q7RTZ1 564 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 DMBX1Q8NFW5 382 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 OR51H1Q8NH63 302 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 C5orf30Q96GV9 206 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 RHOVQ96L33 236 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 P2RX4Q99571 388 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 GNB4Q9HAV0 340 aa8.48□□□□□ -1.05
CLIP3-203ENST00000586457 PLXNB1O43157 2135 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 LINC01619G3V211 115 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 ARPC1BO15143 372 aaKnown RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 DHFRP00374 187 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 HPRT1P00492 218 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 HSPB1P04792 205 aaKnown RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 CRYGBP07316 175 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 SAA1P0DJI8 122 aaPredicted RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 EGR2P11161 476 aaPredicted RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 HOXD3P31249 432 aaPredicted RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 MAS1LP35410 378 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 TATDN3Q17R31 274 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 RNASE12Q5GAN4 147 aaKnown RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 ETV3LQ6ZN32 361 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 VKORC1L1Q8N0U8 176 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 GPX8Q8TED1 209 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 SRSF12Q8WXF0 261 aaKnown RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 FYTTD1Q96QD9 318 aaKnown RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 GPHA2Q96T91 129 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 BCL7BQ9BQE9 202 aa8.47□□□□□ -1.05
CLIP3-203ENST00000586457 ZNF430Q9H8G1 570 aaPredicted RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 RANGRFQ9HD47 186 aaPredicted RBP8.47□□□□□ -1.05
CLIP3-203ENST00000586457 I3L521 148 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 GPR31O00270 319 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 OVOL1O14753 267 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 CYB5BO43169 146 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 SOX15O60248 233 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 RAMP3O60896 148 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 TPPPO94811 219 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 KBTBD11O94819 623 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 IGLV2-14P01704 120 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 LGALS1P09382 135 aaKnown RBP8.46□□□□□ -1.06
CLIP3-203ENST00000586457 OR9G9P0C7N8 305 aa8.46□□□□□ -1.06
CLIP3-203ENST00000586457 DEFA4P12838 97 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms