RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LYZL2Q7Z4W2 148 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 DMBX1Q8NFW5 382 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 OR8H1Q8NGG4 311 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 VSTM2AQ8TAG5 236 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 CHAC2Q8WUX2 184 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 EAF1Q96JC9 268 aaPredicted RBP8.62□□□□□ -1.03
SS18-213ENST00000579640 SPIN2AQ99865 258 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 SMR3AQ99954 134 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 SPIN2BQ9BPZ2 258 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 PRDM13Q9H4Q3 707 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 MGAT4CQ9UBM8 478 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 MMP24Q9Y5R2 645 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 ACANP16112 2415 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 GOSR2O14653 212 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 KRASP01116 189 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 IGKV1-5P01602 117 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 SLC25A6P12236 298 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 PAX6P26367 422 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 G6PCP35575 357 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 BCAP31P51572 246 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 FCN2Q15485 313 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 VMA21Q3ZAQ7 101 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 NMSQ5H8A3 153 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 GGNBP1Q5YKI7 109 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 GSG1LQ6UXU4 331 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 H2BFWTQ7Z2G1 175 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 BCL6BQ8N143 479 aaPredicted RBP8.61□□□□□ -1.03
SS18-213ENST00000579640 Q8N6K4 173 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 OR5M8Q8NGP6 311 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 ASB13Q8WXK3 278 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 ZDHHC16Q969W1 377 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 RHOVQ96L33 236 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 SSX3Q99909 188 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 C1RLQ9NZP8 487 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 CDC42EP3Q9UKI2 254 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 ADAP1O75689 374 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 P0C879 139 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 TMEM11P17152 192 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 UBE2KP61086 200 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 TUSC1Q2TAM9 212 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 THOC7Q6I9Y2 204 aaKnown RBP8.61□□□□□ -1.03
SS18-213ENST00000579640 IL17RELQ6ZVW7 336 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 NPBQ8NG41 125 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 OR4A5Q8NH83 315 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 OR5R1Q8NH85 324 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 TMEM140Q9NV12 185 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 BET1LQ9NYM9 111 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 PITPNC1Q9UKF7 332 aa8.61□□□□□ -1.03
SS18-213ENST00000579640 SOX21Q9Y651 276 aaPredicted RBP8.61□□□□□ -1.03
SS18-213ENST00000579640 A0A1B0GU03 582 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 C5orf51A6NDU8 294 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 SRRM4A7MD48 611 aaKnown RBP8.6□□□□□ -1.03
SS18-213ENST00000579640 OR2A4O95047 310 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 IGLV2-23P01705 113 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 OR4A47Q6IF82 309 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 Q6YL49 198 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 PUSL1Q8N0Z8 303 aaKnown RBP8.6□□□□□ -1.03
SS18-213ENST00000579640 TEX45Q8NA69 505 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 C22orf15Q8WYQ4 148 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 GPR146Q96CH1 333 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 OR2A7Q96R45 310 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 COA4Q9NYJ1 87 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 KIAA1456Q9P272 454 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 TCF19Q9Y242 345 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 F8P00451 2351 aa8.6□□□□□ -1.03
SS18-213ENST00000579640 C13orf42A0A1B0GVH6 325 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 BTBD17A6NE02 478 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 FAM25EA8MYX2 175 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 H3BUX3 64 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 CCSO14618 274 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 NBR2O15453 112 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 NDUFA3O95167 84 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 IL6RP08887 468 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 FGF2P09038 288 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 SAA1P0DJI8 122 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 CD24P25063 80 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 IER3P46695 156 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 CYCSP99999 105 aaKnown RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 SMCO1Q147U7 214 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 PSG5Q15238 335 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 MMDQ15546 238 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 C2orf68Q2NKX9 166 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 IAH1Q2TAA2 248 aaPredicted RBP8.59□□□□□ -1.03
SS18-213ENST00000579640 SSX9Q7RTT3 188 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 C16orf82Q7Z2V1 217 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 VKORC1L1Q8N0U8 176 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 OR11H7Q8NGC8 314 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 TMEM167AQ8TBQ9 72 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 PIFOQ8TCI5 191 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 SSMEM1Q8WWF3 244 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 RITA1Q96K30 269 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 C2orf50Q96LR7 162 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 CACFD1Q9UGQ2 172 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 NAV3Q8IVL0 2385 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 TLN2Q9Y4G6 2542 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 A0A0G2JRQ6 117 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 MDFIC2A0A1B0GVS7 189 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 UPK2O00526 184 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 RRHO14718 337 aa8.59□□□□□ -1.03
SS18-213ENST00000579640 SNAPC5O75971 98 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms