RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 EFNB1P98172 346 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 GPR176Q14439 515 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 PTGES3Q15185 160 aaKnown RBP11.35□□□□□ -0.59
VPS53-218ENST00000575207 SSX9Q7RTT3 188 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 CXorf58Q96LI9 332 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 RNF2Q99496 336 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 ZNF430Q9H8G1 570 aaPredicted RBP11.35□□□□□ -0.59
VPS53-218ENST00000575207 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
VPS53-218ENST00000575207 TAS2R4Q9NYW5 299 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 TNXBP22105 4242 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 IGKV3-7A0A075B6H7 116 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 TRBV5-7A0A0A0MS05 114 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 HMX3A6NHT5 357 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 CREBL2O60519 120 aaPredicted RBP11.34□□□□□ -0.59
VPS53-218ENST00000575207 DHFRP00374 187 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 IRF3Q14653 427 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 TRPT1Q86TN4 253 aaKnown RBP11.34□□□□□ -0.59
VPS53-218ENST00000575207 GIMAP1Q8WWP7 306 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 OR2A7Q96R45 310 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 CLEC5AQ9NY25 188 aa11.34□□□□□ -0.59
VPS53-218ENST00000575207 CCDC22O60826 627 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 DFFBO76075 338 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 ANXA8P13928 327 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 HTN3P15516 51 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 PRKACGP22612 351 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 CEACAM6P40199 344 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 DDI2Q5TDH0 399 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 CGB2Q6NT52 195 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 HS3ST5Q8IZT8 346 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 FYTTD1Q96QD9 318 aaKnown RBP11.33□□□□□ -0.6
VPS53-218ENST00000575207 IL4I1Q96RQ9 567 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 ELAC2Q9BQ52 826 aaKnown RBP11.33□□□□□ -0.6
VPS53-218ENST00000575207 C20orf24Q9BUV8 137 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 RAB21Q9UL25 225 aa11.33□□□□□ -0.6
VPS53-218ENST00000575207 TCRBV5S2A0A599 114 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 TEX22C9J3V5 150 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 K7EMT4 169 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 ZNF207O43670 478 aaKnown RBP11.32□□□□□ -0.6
VPS53-218ENST00000575207 CST1P01037 141 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 RPSAP08865 295 aaKnown RBP11.32□□□□□ -0.6
VPS53-218ENST00000575207 MNAT1P51948 309 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 DEFB131AP59861 70 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 OXA1LQ15070 435 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 RTL8BQ17RB0 113 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 SIGIRRQ6IA17 410 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 GBGT1Q8N5D6 347 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 ZNF502Q8TBZ5 544 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 PTX4Q96A99 478 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 Q9H3A6 140 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 OR1A1Q9P1Q5 309 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 AASSQ9UDR5 926 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 LINC00588Q9Y4M8 146 aa11.32□□□□□ -0.6
VPS53-218ENST00000575207 B2RBV5 119 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 SLC16A6O15403 523 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 HIST1H1BP16401 226 aaKnown RBP11.31□□□□□ -0.6
VPS53-218ENST00000575207 ZBTB25P24278 435 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 ASIPP42127 132 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 TAGLNQ01995 201 aaKnown RBP11.31□□□□□ -0.6
VPS53-218ENST00000575207 MMD2Q8IY49 270 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.31□□□□□ -0.6
VPS53-218ENST00000575207 ATP6V1G3Q96LB4 118 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 SRSF8Q9BRL6 282 aaKnown RBP11.31□□□□□ -0.6
VPS53-218ENST00000575207 NIPSNAP3BQ9BS92 247 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 Q9H8V8 135 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 TMEM138Q9NPI0 162 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 FGFR1OP2Q9NVK5 253 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 SMPXQ9UHP9 88 aa11.31□□□□□ -0.6
VPS53-218ENST00000575207 IGHV3OR16-8A0A075B7F1 116 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 EREGO14944 169 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 PDCD6O75340 191 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 REG1AP05451 166 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 CRYGCP07315 174 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 CCL18P55774 89 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 SNRPGP62308 76 aaKnown RBP11.3□□□□□ -0.6
VPS53-218ENST00000575207 PAFAH1B2P68402 229 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 FAM90A2PQ658T7 463 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 Q6ZRN7 208 aaPredicted RBP11.3□□□□□ -0.6
VPS53-218ENST00000575207 CMTM5Q96DZ9 223 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 CMTM3Q96MX0 182 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 SELENOIQ9C0D9 397 aa11.3□□□□□ -0.6
VPS53-218ENST00000575207 IGLV11-55A0A075B6I3 123 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 TEX48A0A1B0GUV7 120 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 A0A1W2PPQ1 181 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 TMEM189A5PLL7 270 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 TMEM212A6NML5 194 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 NDUFA4O00483 81 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 GNGT2O14610 69 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 CDK10Q15131 360 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 SVOPQ8N4V2 548 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 RHPN1-AS1Q9BWJ2 59 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 BANF2Q9H503 90 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 DKK2Q9UBU2 259 aa11.29□□□□□ -0.6
VPS53-218ENST00000575207 J3QLW9 94 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 CHEK1O14757 476 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 FAM107AO95990 144 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 SAA1P0DJI8 122 aaPredicted RBP11.28□□□□□ -0.6
VPS53-218ENST00000575207 RRASP10301 218 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 DEFA4P12838 97 aa11.28□□□□□ -0.6
VPS53-218ENST00000575207 AREGP15514 252 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms