RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 DEFB115Q30KQ5 88 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 PAXXQ9BUH6 204 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 IL36GQ9NZH8 169 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 TMPRSS2O15393 492 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 DEFA4P12838 97 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 UCP1P25874 307 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 TMEM177Q53S58 311 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 RHBDD2Q6NTF9 364 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 RBPMS2Q6ZRY4 209 aaKnown RBP5.38□□□□□ -1.55
CLK3-212ENST00000563418 ZNF683Q8IZ20 524 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 SNRNP40Q96DI7 357 aaKnown RBP5.38□□□□□ -1.55
CLK3-212ENST00000563418 TM2D1Q9BX74 207 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 DUSP15Q9H1R2 295 aaPredicted RBP5.38□□□□□ -1.55
CLK3-212ENST00000563418 A0A1W2PQD3 144 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 IGLC7A0M8Q6 106 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 GCHFRP30047 84 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 BVES-AS1Q5T3Y7 98 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 LILRA3Q8N6C8 439 aaPredicted RBP5.38□□□□□ -1.55
CLK3-212ENST00000563418 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.38□□□□□ -1.55
CLK3-212ENST00000563418 NGFRP08138 427 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 GNG3P63215 75 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 Q6ZWC4 215 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 LYG1Q8N1E2 194 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 SSMEM1Q8WWF3 244 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 RAB1CQ92928 201 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 SS18L2Q9UHA2 77 aa5.38□□□□□ -1.55
CLK3-212ENST00000563418 NPIPB13A6NJU9 1138 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 NPIPB4C9JG80 1138 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 C9orf153Q5TBE3 101 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 MED29Q9NX70 200 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 AMMECR1Q9Y4X0 333 aaPredicted RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 RHOGP84095 191 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 Q96M66 194 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 FAM53BQ14153 422 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 Q8NFD4 153 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 ZNF137PP52743 207 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 KLRB1Q12918 225 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 ZIC1Q15915 447 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 ZNF718Q3SXZ3 478 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 OR4C13Q8NGP0 309 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 FMC1Q96HJ9 113 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 CXCL16Q9H2A7 254 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 DOCK8Q8NF50 2099 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 TRGV10A0A0A0MS01 117 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 IFNL4K9M1U5 179 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 CLDN14O95500 239 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 PFN1P07737 140 aaKnown RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 CYBAP13498 195 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 IGFBP3P17936 291 aaPredicted RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 YPEL3P61236 119 aaPredicted RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 RPS15P62841 145 aaKnown RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 PAPPA-AS1Q5QFB9 102 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 BAHD1Q8TBE0 780 aaPredicted RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 C1QTNF4Q9BXJ3 329 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 A0A1W2PP55 124 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 HBDP02042 147 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 CDKN1AP38936 164 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 FAM90A2PQ658T7 463 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 MOGAT3Q86VF5 341 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 GREB1LQ9C091 1923 aaPredicted RBP5.37□□□□□ -1.55
CLK3-212ENST00000563418 SIP14410 1827 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 A0A1W2PRE2 83 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 IGFBP4P22692 258 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 MESP2Q0VG99 397 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 SMIM20Q8N5G0 67 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 ZNF525Q8N782 197 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 EMC6Q9BV81 110 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 DNAJC25-GNG10A0A024R161 153 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 CX3CL1P78423 397 aa5.37□□□□□ -1.55
CLK3-212ENST00000563418 SRFP11831 508 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 ACP1P24666 158 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 IZUMO4Q1ZYL8 232 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 ARPC1AQ92747 370 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 FAM234AQ9H0X4 552 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 SLC25A10Q9UBX3 287 aaPredicted RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 ATP23Q9Y6H3 246 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 NRG2O14511 850 aaPredicted RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 DHHO43323 396 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 ZNF585BQ52M93 769 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 BHLHA9Q7RTU4 235 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 TMEM230Q96A57 120 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 HDHD3Q9BSH5 251 aaPredicted RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 IGHMP01871 453 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 APOHP02749 345 aaPredicted RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 YPEL5P62699 121 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 GNB2P62879 340 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 CT83Q5H943 113 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 SSBP3Q9BWW4 388 aaPredicted RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 TRAV26-1A0A087WT03 109 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 A0A1B0GUT8 65 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 RPL30P62888 115 aaKnown RBP5.36□□□□□ -1.55
CLK3-212ENST00000563418 FXYD3Q14802 87 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 SPEM1Q8N4L4 309 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 TRAV2A0A0B4J234 112 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 KLRC4-KLRK1H3BQV0 150 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 NBEAP1P0C6P0 100 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 PVRP15151 417 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 MEOX1P50221 254 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 UNC119Q13432 240 aa5.36□□□□□ -1.55
CLK3-212ENST00000563418 LINC01590Q5TEZ4 76 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms