RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SELENOHQ8IZQ5 122 aaKnown RBP13.24□□□□□ -0.29
VPS4A-202ENST00000562754 VKORC1L1Q8N0U8 176 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 R3HDM4Q96D70 268 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 DUX5Q96PT3 197 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 PLSCR3Q9NRY6 295 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 TNFRSF19Q9NS68 423 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 VPREB3Q9UKI3 123 aa13.24□□□□□ -0.29
VPS4A-202ENST00000562754 OR2F2O95006 317 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 IGKV1-5P01602 117 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 SAA1P0DJI8 122 aaPredicted RBP13.23□□□□□ -0.29
VPS4A-202ENST00000562754 G6PCP35575 357 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 PSG5Q15238 335 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 MMDQ15546 238 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 POU2AF1Q16633 256 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 TMEM268Q5VZI3 342 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 RBMS3Q6XE24 437 aaKnown RBP13.23□□□□□ -0.29
VPS4A-202ENST00000562754 LGI3Q8N145 548 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 TMEM86BQ8N661 226 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 LRTM2Q8N967 370 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 MITD1Q8WV92 249 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 RBPMSQ93062 196 aaKnown RBP13.23□□□□□ -0.29
VPS4A-202ENST00000562754 SEC22AQ96IW7 307 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 RBM14Q96PK6 669 aaKnown RBP13.23□□□□□ -0.29
VPS4A-202ENST00000562754 TSNAXQ99598 290 aaKnown RBP13.23□□□□□ -0.29
VPS4A-202ENST00000562754 RNF5Q99942 180 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 SLC25A33Q9BSK2 321 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 CHIAQ9BZP6 476 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 TPSG1Q9NRR2 321 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 ALG5Q9Y673 324 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 POMT1Q9Y6A1 747 aa13.23□□□□□ -0.29
VPS4A-202ENST00000562754 A0A0A6YYJ9 748 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 A0A0G2JRQ6 117 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 BTBD17A6NE02 478 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 MARCH11A6NNE9 402 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 NBR2O15453 112 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 SLC25A17O43808 307 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 NDUFA3O95167 84 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 NQO2P16083 231 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 LGALS7P47929 136 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 SRPXP78539 464 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 SSX9Q7RTT3 188 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 ZNF695Q8IW36 515 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 SLC35G3Q8N808 338 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 NPBQ8NG41 125 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 ZNF418Q8TF45 676 aaPredicted RBP13.22□□□□□ -0.29
VPS4A-202ENST00000562754 IL22RA2Q969J5 263 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 RHOVQ96L33 236 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 GPN1Q9HCN4 374 aaPredicted RBP13.22□□□□□ -0.29
VPS4A-202ENST00000562754 PITPNC1Q9UKF7 332 aa13.22□□□□□ -0.29
VPS4A-202ENST00000562754 A0A0B4J2A0 478 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 SNRPGP15A8MWD9 76 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 RRHO14718 337 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 CREBL2O60519 120 aaPredicted RBP13.21□□□□□ -0.29
VPS4A-202ENST00000562754 SPDEFO95238 335 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 HRASP01112 189 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 KRASP01116 189 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 CRYGBP07316 175 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 P0C879 139 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 HILS1P60008 231 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 UBE2KP61086 200 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 IZUMO4Q1ZYL8 232 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 OR4A47Q6IF82 309 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 LYZL2Q7Z4W2 148 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 PUSL1Q8N0Z8 303 aaKnown RBP13.21□□□□□ -0.29
VPS4A-202ENST00000562754 C12orf45Q8N5I9 185 aaPredicted RBP13.21□□□□□ -0.29
VPS4A-202ENST00000562754 Q8N9W7 124 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 COQ8AQ8NI60 647 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 FBXL15Q9H469 300 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 TMEM140Q9NV12 185 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 SHPKQ9UHJ6 478 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 MOB4Q9Y3A3 225 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 TNCP24821 2201 aa13.21□□□□□ -0.29
VPS4A-202ENST00000562754 AKR1C2P52895 323 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 ERVK-16P61578 105 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 C5orf64Q2M2E5 130 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 MRGPRG-AS1Q2M3A8 158 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 VMA21Q3ZAQ7 101 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 Q6ZNX1 250 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 FAM71E2Q8N5Q1 922 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 DMBX1Q8NFW5 382 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 OR8H1Q8NGG4 311 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 PHB2Q99623 299 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 OR51J1Q9H342 316 aa13.2□□□□□ -0.3
VPS4A-202ENST00000562754 METTL1Q9UBP6 276 aaKnown RBP13.2□□□□□ -0.3
VPS4A-202ENST00000562754 PLXNB1O43157 2135 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 TRAV3A0A0B4J244 114 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 DBX1A6NMT0 343 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 NCBP2LA6PVI3 153 aaKnown RBP13.19□□□□□ -0.3
VPS4A-202ENST00000562754 CLDN34H7C241 214 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 GPR137BO60478 399 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 ADAP1O75689 374 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 KBTBD11O94819 623 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 AMY1AP04745 511 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 IL6RP08887 468 aaPredicted RBP13.19□□□□□ -0.3
VPS4A-202ENST00000562754 OR9G9P0C7N8 305 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 NMSQ5H8A3 153 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 C16orf82Q7Z2V1 217 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 C5orf56Q8N8D9 126 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 TMEM167AQ8TBQ9 72 aa13.19□□□□□ -0.3
VPS4A-202ENST00000562754 BET1LQ9NYM9 111 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms