RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	FAM90A24P	P0C7X0	464 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGFBP2	P18065	325 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	RPL11	P62913	178 aa	Known RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	RELB	Q01201	579 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	VMA21	Q3ZAQ7	101 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SPATA31B1P	Q5VZV4	182 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	FAM89B	Q8N5H3	189 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	DCAF16	Q9NXF7	216 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	TCFL5	Q9UL49	500 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	OBSL1	O75147	1896 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1-12	A0A0C4DH73	117 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	DPRX	A6NFQ7	191 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005		H3BVH4	76 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	RRH	O14718	337 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	EFNA2	O43921	213 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGKV1D-12	P01611	117 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	RFPL3S	P0C7P2	107 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	GZMB	P10144	247 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	PRDX2	P32119	198 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	PCOLCE	Q15113	449 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	MMD	Q15546	238 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	DHRS13	Q6UX07	377 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CARF	Q8N187	725 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	OR2T6	Q8NHC8	308 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	DIRC2	Q96SL1	478 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	C2orf88	Q9BSF0	95 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CLEC5A	Q9NY25	188 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	TRBV9	A0A0B4J1U6	114 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	GAGE10	A6NGK3	116 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	NCBP2L	A6PVI3	153 aa	Known RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005		J3QR06	171 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SELL	P14151	372 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	GZMH	P20718	246 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	MFAP2	P55001	183 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SOX8	P57073	446 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	PCSK4	Q6UW60	755 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SLC25A45	Q8N413	288 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZADH2	Q8N4Q0	377 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	VWCE	Q96DN2	955 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	PERP	Q96FX8	193 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	PRDM14	Q9GZV8	571 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CLEC1B	Q9P126	229 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF785	A8K8V0	405 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005		J3KRW8	73 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	VENTX	O95231	258 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	IGHV2-5	P01817	119 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CELA3A	P09093	270 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	HIST1H1E	P10412	219 aa	Known RBP	4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	GNG5	P63218	68 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	SLC35E4	Q6ICL7	350 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	TEX38	Q6PEX7	206 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CYP2G1P	Q6ZSU1	146 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM256	Q8N2U0	113 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMEM171	Q8WVE6	324 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005	CLDN16	Q9Y5I7	305 aa		4.22	□□□□□ -1.73
SYNE2-223	ENST00000557005		A0A1W2PN81	502 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	ODAM	A1E959	279 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	TMPRSS2	O15393	492 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	CSRP1	P21291	193 aa	Known RBP	4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	COX7A1	P24310	79 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	ACP1	P24666	158 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	SPSB3	Q6PJ21	355 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	S100A7A	Q86SG5	101 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	TGIF2LY	Q8IUE0	185 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	ZNF441	Q8N8Z8	693 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	VOPP1	Q96AW1	172 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	MRPL13	Q9BYD1	178 aa	Known RBP	4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	NPVF	Q9HCQ7	196 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	IL36G	Q9NZH8	169 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	CDC42EP3	Q9UKI2	254 aa		4.21	□□□□□ -1.73
SYNE2-223	ENST00000557005	KIF26A	Q9ULI4	1882 aa	Predicted RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	CEACAM18	A8MTB9	384 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PPIH	O43447	177 aa	Known RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	NDUFB3	O43676	98 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	IGHV3-48	P01763	117 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	CEACAM1	P13688	526 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	MAS1L	P35410	378 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	LRRC10	Q5BKY1	277 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	LPAR2	Q9HBW0	351 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PLSCR2	Q9NRY7	297 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PLA2G2E	Q9NZK7	142 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PRND	Q9UKY0	176 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	ZFP30	Q9Y2G7	519 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	PATE3	B3GLJ2	98 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	IFNL4	K9M1U5	179 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	CELA3B	P08861	270 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR9G9	P0C7N8	305 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	UCP2	P55851	309 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	KLF3	P57682	345 aa	Predicted RBP	4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	RIG	Q13278	110 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005		Q1RN00	199 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	FBLN7	Q53RD9	439 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	SPSB4	Q96A44	273 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	WBP1	Q96G27	269 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	OR8B2	Q96RD0	313 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	AAMDC	Q9H7C9	122 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	SEMA5B	Q9P283	1151 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	HIGD1A	Q9Y241	93 aa		4.21	□□□□□ -1.74
SYNE2-223	ENST00000557005	UFC1	Q9Y3C8	167 aa		4.21	□□□□□ -1.74

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