RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DCSTAMPQ9H295 470 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 Q9H3A6 140 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 PATZ1Q9HBE1 687 aaKnown RBP3.06□□□□□ -1.92
PRPF39-209ENST00000556353 MED9Q9NWA0 146 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 PAK1IP1Q9NWT1 392 aaPredicted RBP3.06□□□□□ -1.92
PRPF39-209ENST00000556353 SPANXCQ9NY87 97 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 COPZ2Q9P299 210 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 OPTCQ9UBM4 332 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 SCP2D1Q9UJQ7 156 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 PURGQ9UJV8 347 aaKnown RBP3.06□□□□□ -1.92
PRPF39-209ENST00000556353 GNG8Q9UK08 70 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 BOKQ9UMX3 212 aaPredicted RBP3.06□□□□□ -1.92
PRPF39-209ENST00000556353 POLDIP2Q9Y2S7 368 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 UFC1Q9Y3C8 167 aa3.06□□□□□ -1.92
PRPF39-209ENST00000556353 TGIF2-C20orf24A0A0A6YYL0 155 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 SMIM9A6NGZ8 99 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 A8MT66 165 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 EFCAB9A8MZ26 197 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 F5H768 121 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 H3BSA7 217 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 H7C417 338 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 FAAHO00519 579 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 SPAG7O75391 227 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 UGT2B17O75795 530 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TRAPPC6AO75865 159 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 S1PR2O95136 353 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 MPZL1O95297 269 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 CNIH1O95406 144 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 IFNA1P01562 189 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TYMSP04818 313 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 ZNF708P17019 499 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 ALOX5APP20292 161 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 HTR1FP30939 366 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 GGT2P36268 569 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 MAP2K4P45985 399 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 LGALS7P47929 136 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 CX3CR1P49238 355 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 EVX1P49640 407 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 EMDP50402 254 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 DAP3P51398 398 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 FOXA1P55317 472 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 EBI3Q14213 229 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 GUSBP1Q15486 140 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TAF9Q16594 264 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 GUCA2BQ16661 112 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 GGTA1PQ4G0N0 100 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TRMT12Q53H54 448 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 C6orf52Q5T4I8 152 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 FAM78BQ5VT40 261 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 SLC48A1Q6P1K1 146 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TOMM20LQ6UXN7 152 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 UNQ9370/PRO34162Q6UXP9 181 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 LINC00336Q6ZUF6 198 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 C6orf120Q7Z4R8 191 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TSEN54Q7Z6J9 526 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR4F6Q8NGB9 312 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR52R1Q8NGF1 315 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR4P4Q8NGL7 312 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR1P1Q8NH06 330 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR1F12Q8NHA8 337 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 STAG3L4Q8TBR4 150 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 ZFP90Q8TF47 636 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 DCAKDQ8WVC6 231 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 TNFAIP8L1Q8WVP5 186 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 HIST1H2ACQ93077 130 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 UBE2E3Q969T4 207 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 STARD4Q96DR4 205 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 NARS2Q96I59 477 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 KCTD7Q96MP8 289 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 OR8B4Q96RC9 309 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 CCDC32Q9BV29 185 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 CDC42EP4Q9H3Q1 356 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 NANOGQ9H9S0 305 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 LRTM1Q9HBL6 345 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 NMRAL1Q9HBL8 299 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 EXOSC3Q9NQT5 275 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 MCUBQ9NWR8 336 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 GNG12Q9UBI6 72 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 METTL1Q9UBP6 276 aaKnown RBP3.05□□□□□ -1.92
PRPF39-209ENST00000556353 JPT1Q9UK76 154 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 VPREB3Q9UKI3 123 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 SSR3Q9UNL2 185 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 ING4Q9UNL4 249 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 SLC35A3Q9Y2D2 325 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 DOCK11Q5JSL3 2073 aa3.05□□□□□ -1.92
PRPF39-209ENST00000556353 A0A0G2JMP0 313 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 OR5H14A6NHG9 310 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 EEF1E1-BLOC1S5C9J1V9 151 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 ZNF878C9JN71 531 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 H3BTX0 84 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 M0R143 59 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 UBFD1O14562 309 aaKnown RBP3.04□□□□□ -1.92
PRPF39-209ENST00000556353 CASKO14936 926 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 EEF1E1O43324 174 aaKnown RBP3.04□□□□□ -1.92
PRPF39-209ENST00000556353 ORC5O43913 435 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 ICOSLGO75144 302 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 IGKV1D-16P01601 117 aa3.04□□□□□ -1.92
PRPF39-209ENST00000556353 GAPDHP04406 335 aaKnown RBP3.04□□□□□ -1.92
PRPF39-209ENST00000556353 IL3P08700 152 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms