RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 C4orf46Q504U0 113 aa11.27□□□□□ -0.61
SHMT2-217ENST00000555116 C9orf152Q5JTZ5 239 aa11.27□□□□□ -0.61
SHMT2-217ENST00000555116 ZNF383Q8NA42 475 aa11.27□□□□□ -0.61
SHMT2-217ENST00000555116 OR2A7Q96R45 310 aa11.27□□□□□ -0.61
SHMT2-217ENST00000555116 M0R1X1 148 aa11.26□□□□□ -0.61
SHMT2-217ENST00000555116 GIPP09681 153 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-217ENST00000555116 OR4E1P0C645 316 aa11.26□□□□□ -0.61
SHMT2-217ENST00000555116 ARPC4P59998 168 aa11.26□□□□□ -0.61
SHMT2-217ENST00000555116 ARSJQ5FYB0 599 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-217ENST00000555116 FAM71E2Q8N5Q1 922 aa11.26□□□□□ -0.61
SHMT2-217ENST00000555116 MRGPRFQ96AM1 343 aa11.26□□□□□ -0.61
SHMT2-217ENST00000555116 LIN7CQ9NUP9 197 aaKnown RBP11.26□□□□□ -0.61
SHMT2-217ENST00000555116 IGKV1D-13A0A0B4J2D9 117 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 IGKV1-13P0DP09 117 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 CNTFRP26992 372 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 MC5RP33032 325 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 C2orf68Q2NKX9 166 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 TMED4Q7Z7H5 227 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 OR5AP2Q8NGF4 316 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 VSIG4Q9Y279 399 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 WASHC3Q9Y3C0 194 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 RBM7Q9Y580 266 aaKnown RBP11.25□□□□□ -0.61
SHMT2-217ENST00000555116 IGHG2P01859 326 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 PMP2P02689 132 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 IFNA6P05013 189 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 LUMP51884 338 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-217ENST00000555116 UBE2MP61081 183 aaKnown RBP11.25□□□□□ -0.61
SHMT2-217ENST00000555116 RAP2BP61225 183 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 NECAP2Q9NVZ3 263 aa11.25□□□□□ -0.61
SHMT2-217ENST00000555116 OR5H8P0DN80 308 aa11.24□□□□□ -0.61
SHMT2-217ENST00000555116 MMDQ15546 238 aa11.24□□□□□ -0.61
SHMT2-217ENST00000555116 ACTBL2Q562R1 376 aa11.24□□□□□ -0.61
SHMT2-217ENST00000555116 UXS1Q8NBZ7 420 aa11.24□□□□□ -0.61
SHMT2-217ENST00000555116 NPBQ8NG41 125 aa11.24□□□□□ -0.61
SHMT2-217ENST00000555116 LINC01548A6NM66 108 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 H7C2Y5 167 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 NBR2O15453 112 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 NDUFA3O95167 84 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 IGLV2-14P01704 120 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 AADACP22760 399 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 FCGR2CP31995 323 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 H2BFSP57053 126 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 LGALSLQ3ZCW2 172 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-217ENST00000555116 VAX1Q5SQQ9 334 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 HIST2H2BDQ6DRA6 164 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 ZNF767PQ75MW2 155 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 SLC25A42Q86VD7 318 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 ZNF645Q8N7E2 425 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 SGMS2Q8NHU3 365 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 WDR89Q96FK6 387 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-217ENST00000555116 RASL11BQ9BPW5 248 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 SIX6O95475 246 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 APOA2P02652 100 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 IGKV1-16P04430 117 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 DUTP33316 252 aaKnown RBP11.23□□□□□ -0.61
SHMT2-217ENST00000555116 THBS3P49746 956 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 DHRS2Q13268 280 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 SLC35E3Q7Z769 313 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 PDPNQ86YL7 162 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 C12orf45Q8N5I9 185 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-217ENST00000555116 C11orf44Q8N8P7 122 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 DDB2Q92466 427 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 RNF5Q99942 180 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 SLC35D1Q9NTN3 355 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 TNCP24821 2201 aa11.23□□□□□ -0.61
SHMT2-217ENST00000555116 GOSR2O14653 212 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 PPYP01298 95 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 CD28P10747 220 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 TAS2R46P59540 309 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 C5orf64Q2M2E5 130 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 ZNF660Q6AZW8 331 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-217ENST00000555116 OVCH2Q7RTZ1 564 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 ARRDC1Q8N5I2 433 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 TERB2Q8NHR7 220 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 HSPB9Q9BQS6 159 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 EHFQ9NZC4 300 aa11.22□□□□□ -0.61
SHMT2-217ENST00000555116 LINC00473A8K010 186 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 RRHO14718 337 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 FBXO24O75426 580 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 SLC22A5O76082 557 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 TSPAN5P62079 268 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 DHODHQ02127 395 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 EIF4EBP1Q13541 118 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-217ENST00000555116 C10orf99Q6UWK7 81 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 DHRS11Q6UWP2 260 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 CENPVQ7Z7K6 275 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-217ENST00000555116 OR5AU1Q8NGC0 362 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 OR5H2Q8NGV7 314 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 ADTRPQ96IZ2 230 aa11.21□□□□□ -0.61
SHMT2-217ENST00000555116 NOL4LQ96MY1 436 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-217ENST00000555116 TSC22D2O75157 780 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 HLA-AP01891 365 aaKnown RBP11.21□□□□□ -0.62
SHMT2-217ENST00000555116 HLA-DRB1P01911 266 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 TAGLNQ01995 201 aaKnown RBP11.21□□□□□ -0.62
SHMT2-217ENST00000555116 PRR31Q5SQ13 230 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 LYG2Q86SG7 212 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 BVESQ8NE79 360 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 MARCH1Q8TCQ1 289 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 CCL28Q9NRJ3 127 aa11.21□□□□□ -0.62
SHMT2-217ENST00000555116 KIAA1456Q9P272 454 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms