RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 FXYD3Q14802 87 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 MEF2DQ14814 521 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 C19orf54Q5BKX5 351 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 AADACL3Q5VUY0 350 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 LYSMD2Q8IV50 215 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 MMD2Q8IY49 270 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 SLC38A6Q8IZM9 456 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 OR4A5Q8NH83 315 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 MYOZ3Q8TDC0 251 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 C4orf3Q8WVX3 66 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 UBE2E2Q96LR5 201 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 NXF2Q9GZY0 626 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 RBM38Q9H0Z9 239 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 MIXL1Q9H2W2 232 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 SLA2Q9H6Q3 261 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 FAM212BQ9NTI7 297 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 NDUFA13Q9P0J0 144 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 A0A1W2PN81 502 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 CTDSP2O14595 271 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 HPRT1P00492 218 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 S100A5P33763 92 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 MAS1LP35410 378 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 CHRNA7P36544 502 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 MYCNOSP40205 109 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 LINC00205P59089 165 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 PRSS8Q16651 343 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 OR2B11Q5JQS5 317 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 UNQ5815/PRO19632Q6UWF5 114 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 ZNF818PQ6ZRF7 136 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 SPAG16Q8N0X2 631 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 TMEM229BQ8NBD8 167 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 OR52I2Q8NH67 350 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 GRPEL2Q8TAA5 225 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 ZNF486Q96H40 463 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 ABHD1Q96SE0 405 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 FXYD6Q9H0Q3 95 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 PLEKHA2Q9HB19 425 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 TPSG1Q9NRR2 321 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 WSB1Q9Y6I7 421 aa11.26□□□□□ -0.61
CCDC88C-207ENST00000554051 WNK1Q9H4A3 2382 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 G3V318 75 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 KBTBD11O94819 623 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 OR2A4O95047 310 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 BRI3O95415 125 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 CD74P04233 296 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 RPLP1P05386 114 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 NQO2P16083 231 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 CD33P20138 364 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 GNRHRP30968 328 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 GNB1P62873 340 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 RPL30P62888 115 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 RCC1LQ96I51 464 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 OR2A7Q96R45 310 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 CLCC1Q96S66 551 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 SPIN2AQ99865 258 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 SPIN2BQ9BPZ2 258 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 MCRIP2Q9BUT9 160 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 VSIG4Q9Y279 399 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 NUBP2Q9Y5Y2 271 aa11.25□□□□□ -0.61
CCDC88C-207ENST00000554051 SRRM4A7MD48 611 aaKnown RBP11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 FCN1O00602 326 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 TNFSF12O43508 249 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 GSTZ1O43708 216 aaPredicted RBP11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 ERVK-16P61578 105 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 RUNX1Q01196 453 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 TNXAQ16473 311 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 POU2AF1Q16633 256 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 CADM3Q8N126 398 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 WFDC9Q8NEX5 89 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 OR51H1Q8NH63 302 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 TMEM167AQ8TBQ9 72 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 SRSF12Q8WXF0 261 aaKnown RBP11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 RHOVQ96L33 236 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 PHB2Q99623 299 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 BET1LQ9NYM9 111 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 KLK11Q9UBX7 282 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 FBXO7Q9Y3I1 522 aa11.24□□□□□ -0.61
CCDC88C-207ENST00000554051 ARPC1BO15143 372 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 MPPED1O15442 326 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 CD3DP04234 171 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 RLN1P04808 185 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 F2RP25116 425 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 PTBP1P26599 531 aaKnown RBP eCLIP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 RAB9AP51151 201 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 RNASE12Q5GAN4 147 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 THOC7Q6I9Y2 204 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 C8orf86Q6ZUL3 223 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 SLC25A42Q86VD7 318 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 PUSL1Q8N0Z8 303 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 LFNGQ8NES3 379 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 DEDD2Q8WXF8 326 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 RBMXL1Q96E39 390 aaKnown RBP11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 RSRP1Q9BUV0 290 aa11.23□□□□□ -0.61
CCDC88C-207ENST00000554051 A0A0G2JLM5 398 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 FABP12A6NFH5 140 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 DISC1C4P0D8 188 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 PGLYRP1O75594 196 aaPredicted RBP11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 B3GALNT1O75752 331 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 RAB3DO95716 219 aa11.22□□□□□ -0.61
CCDC88C-207ENST00000554051 OR8U8P0C7N1 319 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms