RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TMEM65Q6PI78 240 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 PDZD9Q8IXQ8 264 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 Q8N7P7 452 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 OR13A1Q8NGR1 328 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 OR5H6Q8NGV6 325 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 OR4K15Q8NH41 348 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 ACOT12Q8WYK0 555 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 DYRK2Q92630 601 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 ISOC1Q96CN7 298 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 ARHGAP5-AS1Q96IT6 56 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 TBX15Q96SF7 602 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 PECRQ9BY49 303 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 HEXA-AS1Q9H8Q6 139 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 DIABLOQ9NR28 239 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 RHBDL2Q9NX52 303 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 KCNIP1Q9NZI2 227 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 NUP50Q9UKX7 468 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 RPH3ALQ9UNE2 315 aa4.13□□□□□ -1.75
CLIP1-217ENST00000543205 HIVEP2P31629 2446 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ARHGAP32A7KAX9 2087 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TRAV39A0A0B4J263 110 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CENPVL3A0A0U1RRI6 287 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 KBTBD11-OT1A0A1B0GTJ5 212 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 A0A1B0GUS0 222 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FOXI3A8MTJ6 420 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 H3BMQ9 156 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CHEK1O14757 476 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SPINT2O43291 252 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CD3GP09693 182 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 NPSP0C0P6 89 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV1-8P0DP01 117 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV4-38-2P0DP08 117 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 GNB3P16520 340 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CDK2P24941 298 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 DLX6P56179 175 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM50BP56557 158 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 PRB3Q04118 309 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ARL6IP1Q15041 203 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CDNFQ49AH0 187 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 UBE2NLQ5JXB2 153 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FAM71F2Q6NXP2 309 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF782Q6ZMW2 699 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TCF23Q7RTU1 214 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 PNKDQ8N490 385 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 C11orf42Q8N5U0 333 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SAMD12Q8N8I0 201 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 OR13D1Q8NGV5 346 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 OR5R1Q8NH85 324 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 MRPL30Q8TCC3 161 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ARL11Q969Q4 196 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 S100A16Q96FQ6 103 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CMSS1Q9BQ75 279 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 CALYQ9NYX4 217 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 COMMD3Q9UBI1 195 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 RSL24D1Q9UHA3 163 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 AK3Q9UIJ7 227 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FLVCR2Q9UPI3 526 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF469Q96JG9 3925 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.12□□□□□ -1.751e-9■■■■■ 46
CLIP1-217ENST00000543205 A0A0A6YYH2 397 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV1-69DA0A0B4J2H0 117 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SMIM31A0A1B0GVY4 71 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 A0A1W2PRD5 423 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 A0A1W2PRF3 423 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 A0A1W2PRM7 423 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 A6NJ64 397 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 RNASEK-C17orf49H0YIS7 233 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SNAI2O43623 268 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ORC5O43913 435 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 NDUFB4O95168 129 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FSHBP01225 129 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV1-69P01742 117 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FAM157CP0CG43 387 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 HIST1H1DP16402 221 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 OMGP23515 440 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 COX7A1P24310 79 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 NFYBP25208 207 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TALDO1P37837 337 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 FHITP49789 147 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 UBE2E1P51965 193 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 DLX1P56177 255 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 KLRD1Q13241 179 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 DYNC1I2Q13409 638 aaKnown RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ARFRP1Q13795 201 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 LTC4SQ16873 150 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 C17orf58Q2M2W7 97 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 KLF17Q5JT82 389 aaPredicted RBP4.12□□□□□ -1.75
CLIP1-217ENST00000543205 LY6G6FQ5SQ64 297 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 HEPN1Q6WQI6 88 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 BRD3OSQ6XYD6 125 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 LRTM2Q8N967 370 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 STXBP6Q8NFX7 210 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 RFESDQ8TAC1 157 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM18Q96B42 140 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 PPP1R14BQ96C90 147 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SLC25A38Q96DW6 304 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 SUCNR1Q9BXA5 334 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 ABCG5Q9H222 651 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 C12orf4Q9NQ89 552 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 IDI2-AS1Q9NZ38 188 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms