RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 PSG5Q15238 335 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 ZNF585BQ52M93 769 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 SLC25A42Q86VD7 318 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 DUSP18Q8NEJ0 188 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 NPBQ8NG41 125 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 RASL11BQ9BPW5 248 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 AIFM2Q9BRQ8 373 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 PLEKHA2Q9HB19 425 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 FAM212BQ9NTI7 297 aaPredicted RBP9.24□□□□□ -0.93
YBX3-213ENST00000542641 NUBP2Q9Y5Y2 271 aa9.24□□□□□ -0.93
YBX3-213ENST00000542641 RRHO14718 337 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 FGF16O43320 207 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 SLC25A17O43808 307 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 S1PR2O95136 353 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 IGLV2-23P01705 113 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 H2AFB2P0C5Z0 115 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 VSIG10L2P0DP72 767 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 ANXA3P12429 323 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 NQO2P16083 231 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 ANXA7P20073 488 aaKnown RBP9.23□□□□□ -0.93
YBX3-213ENST00000542641 VAMP1P23763 118 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 RPL15P61313 204 aaKnown RBP9.23□□□□□ -0.93
YBX3-213ENST00000542641 SUPT4H1P63272 117 aaKnown RBP9.23□□□□□ -0.93
YBX3-213ENST00000542641 DHODHQ02127 395 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 TRIM16LQ309B1 348 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 PLET1Q6UQ28 207 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 PRIMA1Q86XR5 153 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 VKORC1L1Q8N0U8 176 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 FAM71E2Q8N5Q1 922 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 C5orf56Q8N8D9 126 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 Q8N9W7 124 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 GALNT14Q96FL9 552 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 RHOVQ96L33 236 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 NPFFR1Q9GZQ6 430 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 TMEM222Q9H0R3 208 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 BEX1Q9HBH7 125 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 COMMD9Q9P000 198 aa9.23□□□□□ -0.93
YBX3-213ENST00000542641 METTL1Q9UBP6 276 aaKnown RBP9.23□□□□□ -0.93
YBX3-213ENST00000542641 NDUFA3O95167 84 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 SPDEFO95238 335 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 PTTG1O95997 202 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 KRASP01116 189 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 AMY1AP04745 511 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 OR4E1P0C645 316 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 RPA2P15927 270 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 UCP1P25874 307 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 RAB25P57735 213 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 UBE2MP61081 183 aaKnown RBP9.22□□□□□ -0.93
YBX3-213ENST00000542641 UBE2KP61086 200 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 BLCAPP62952 87 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 PPP1R1AQ13522 171 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 C5orf64Q2M2E5 130 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 VMA21Q3ZAQ7 101 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 C4orf46Q504U0 113 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 LIN54Q6MZP7 749 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 SSX9Q7RTT3 188 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 DMBX1Q8NFW5 382 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 GLYATL2Q8WU03 294 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 ZFAND2BQ8WV99 257 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 R3HDM4Q96D70 268 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 ALX4Q9H161 411 aaPredicted RBP9.22□□□□□ -0.93
YBX3-213ENST00000542641 FBXL15Q9H469 300 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 SIGLEC9Q9Y336 463 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 NF1P21359 2839 aa9.22□□□□□ -0.93
YBX3-213ENST00000542641 A6NJY4 79 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 SH2D7A6NKC9 451 aaPredicted RBP9.21□□□□□ -0.94
YBX3-213ENST00000542641 MARCH11A6NNE9 402 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 SFT2D2O95562 160 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 CDS2O95674 445 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 IGKV1-39P01597 117 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 HLA-AP01891 365 aaKnown RBP9.21□□□□□ -0.94
YBX3-213ENST00000542641 IGKV1D-39P04432 117 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 SAA1P0DJI8 122 aaPredicted RBP9.21□□□□□ -0.94
YBX3-213ENST00000542641 G6PCP35575 357 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 ERVK-16P61578 105 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 TMEM187Q14656 261 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 RGS21Q2M5E4 152 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 C9orf152Q5JTZ5 239 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 PPP1R27Q86WC6 154 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 ZNF695Q8IW36 515 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 TEX45Q8NA69 505 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 VSTM2AQ8TAG5 236 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 TAF15Q92804 592 aaKnown RBP eCLIP9.21□□□□□ -0.94
YBX3-213ENST00000542641 CLCC1Q96S66 551 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 PRSS22Q9GZN4 317 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 PRR13Q9NZ81 148 aa9.21□□□□□ -0.94
YBX3-213ENST00000542641 SETD2Q9BYW2 2564 aaPredicted RBP9.2□□□□□ -0.94
YBX3-213ENST00000542641 C9orf170A2RU37 121 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 INMT-MINDY4F8WBC2 141 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 FCN1O00602 326 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 ATG12O94817 140 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 OR2A4O95047 310 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 CRYGBP07316 175 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 SPNP16150 400 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 MECP2P51608 486 aaKnown RBP9.2□□□□□ -0.94
YBX3-213ENST00000542641 SRPXP78539 464 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 DHRS2Q13268 280 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 POU2AF1Q16633 256 aa9.2□□□□□ -0.94
YBX3-213ENST00000542641 ARSJQ5FYB0 599 aaPredicted RBP9.2□□□□□ -0.94
YBX3-213ENST00000542641 TMEM268Q5VZI3 342 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms