RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	RNASE7	Q9H1E1	156 aa	Known RBP	7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	RPP21	Q9H633	154 aa	Known RBP	7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	SPANXC	Q9NY87	97 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	AKAP12	Q02952	1782 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	PSMB11	A5LHX3	300 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	CEACAM18	A8MTB9	384 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	IGLC2	P0DOY2	106 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	IGLC3	P0DOY3	106 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	CDKN1A	P38936	164 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	ATG4D	Q86TL0	474 aa	Predicted RBP	7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	STPG4	Q8N801	248 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	LINC00615	Q96LM1	132 aa	Predicted RBP	7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	SCGB3A1	Q96QR1	104 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	GPHA2	Q96T91	129 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	TBC1D29	Q9UFV1	150 aa		7.52	□□□□□ -1.21
YBX3-208	ENST00000540447	TRAV21	A0A0B4J279	112 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	IGKC	P01834	107 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	HBD	P02042	147 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	CRYBA4	P53673	196 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	HIST1H4A	P62805	103 aa	Known RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	CEACAM21	Q3KPI0	293 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	PILRB	Q9UKJ0	227 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	GPX1	P07203	203 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	SCT	P09683	121 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	C19orf54	Q5BKX5	351 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	LINC00596	Q86U02	117 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	OR1L8	Q8NGR8	309 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	ZNF296	Q8WUU4	475 aa	Predicted RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	RTBDN	Q9BSG5	229 aa	Predicted RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447		A0A1W2PRD5	423 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447		A0A1W2PRF3	423 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447		A0A1W2PRM7	423 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	CEACAM3	P40198	252 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	ETDB	Q3ZM63	59 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	C12orf76	Q8N812	135 aa	Predicted RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	NXT2	Q9NPJ8	142 aa	Known RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	ERG28	Q9UKR5	140 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	TRAV26-1	A0A087WT03	109 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447		H0YIG0	161 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	LEP	P41159	167 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	ORMDL3	Q8N138	153 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	STPG3	Q8N7X2	389 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	GDF15	Q99988	308 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	SCNM1	Q9BWG6	230 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	CNTRL	Q7Z7A1	2325 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	CGA	P01215	116 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	GFRA1	P56159	465 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	SPRYD7	Q5W111	196 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	MRPL32	Q9BYC8	188 aa	Known RBP	7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	OSTC	Q9NRP0	149 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	FGF21	Q9NSA1	209 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	TMEM131L	A2VDJ0	1609 aa		7.51	□□□□□ -1.21
YBX3-208	ENST00000540447	PPP1R17	O96001	155 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	CELA3A	P09093	270 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	SSPN	Q14714	243 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	ABHD17A	Q96GS6	310 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	VKORC1	Q9BQB6	163 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	MPC1	Q9Y5U8	109 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	CHD1	O14646	1710 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	IGHV2OR16-5	A0A0B4J2B6	119 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	IL6R	P08887	468 aa	Predicted RBP	7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	CAPZB	P47756	277 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	PGF	P49763	221 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	CBLN3	Q6UW01	205 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	C2orf82	Q6UX34	121 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	PPDPFL	Q8WWR9	84 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	OR2H1	Q9GZK4	316 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	RABAC1	Q9UI14	185 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	EVPL	Q92817	2033 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447		A0A1W2PQF6	199 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	AGBL5	Q8NDL9	886 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	COQ2	Q96H96	371 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	WFDC1	Q9HC57	220 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	FAM157A	C9JC47	383 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	MYF5	P13349	255 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	VKORC1L1	Q8N0U8	176 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	OCC1	Q8TAD7	63 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	SPANXD	Q9BXN6	97 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	NPFFR1	Q9GZQ6	430 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	PCM1	Q15154	2024 aa		7.5	□□□□□ -1.21
YBX3-208	ENST00000540447	CDPF1	Q6NVV7	123 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	EAF1	Q96JC9	268 aa	Predicted RBP	7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	SFXN3	Q9BWM7	321 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	ZNF815P	A8K554	130 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	SYS1-DBNDD2	H3BUS1	97 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	HERV-K104	P63124	156 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	TFF3	Q07654	80 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	PMVK	Q15126	192 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	ZNF818P	Q6ZRF7	136 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	IFI27L1	Q96BM0	104 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	GGTLC1	Q9BX51	225 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	IGLV3-16	A0A075B6K0	115 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	CX3CL1	P78423	397 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	RPS19BP1	Q86WX3	136 aa	Known RBP	7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	IGLV3-27	P01718	113 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	CYB561	P49447	251 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	LOXL3	P58215	753 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	KCNMB1	Q16558	191 aa		7.49	□□□□□ -1.21
YBX3-208	ENST00000540447	C10orf128	Q5T292	105 aa		7.49	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms