RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 C15orf53Q8NAA6 179 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 INO80EQ8NBZ0 244 aaPredicted RBP2.33□□□□□ -2.04
CD44-235ENST00000532339 NOXO1Q8NFA2 376 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 OR4M1Q8NGD0 313 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 OR4K5Q8NGD3 323 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 MRGPRFQ96AM1 343 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 RPEQ96AT9 228 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 TM4SF18Q96CE8 201 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 GALNT14Q96FL9 552 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 SERPINI1Q99574 410 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 GGTLC1Q9BX51 225 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 SLC25A2Q9BXI2 301 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 PARP12Q9H0J9 701 aaKnown RBP2.33□□□□□ -2.04
CD44-235ENST00000532339 WSB1Q9Y6I7 421 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 GPR98Q8WXG9 6306 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 USH2AO75445 5202 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 INS-IGF2F8WCM5 200 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 H7C1H1 209 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 NDUFB3O43676 98 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 FARS2O95363 451 aaKnown RBP2.32□□□□□ -2.04
CD44-235ENST00000532339 IFNA5P01569 189 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 IFI6P09912 130 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 MT1HL1P0DM35 61 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 PRPS2P11908 318 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 CDKN2DP55273 166 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 OR12D2P58182 307 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 ATP6V0D1P61421 351 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 SKP2Q13309 424 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 RGNQ15493 299 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 TSNQ15631 228 aaKnown RBP2.32□□□□□ -2.04
CD44-235ENST00000532339 MAPK14Q16539 360 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 HHATQ5VTY9 493 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 ULK3Q6PHR2 472 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 PLET1Q6UQ28 207 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 SLC36A1Q7Z2H8 476 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 C20orf196Q8IYI0 205 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 SLC22A24Q8N4F4 322 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 C15orf56Q8N910 161 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 Q8N976 141 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 Q8N9L7 120 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 CDRT4Q8N9R6 151 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 C11orf72Q8NBR9 251 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 CHST4Q8NCG5 386 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 DUSP18Q8NEJ0 188 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 OR13G1Q8NGZ3 307 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 ZNF563Q8TA94 476 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 OR51E1Q8TCB6 317 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 DCAKDQ8WVC6 231 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 H1FXQ92522 213 aaKnown RBP2.32□□□□□ -2.04
CD44-235ENST00000532339 EXOSC8Q96B26 276 aaKnown RBP2.32□□□□□ -2.04
CD44-235ENST00000532339 NRBF2Q96F24 287 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 UBE2E2Q96LR5 201 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 TAPBPLQ9BX59 468 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 SAV1Q9H4B6 383 aaPredicted RBP2.32□□□□□ -2.04
CD44-235ENST00000532339 LINC00527Q9UJ94 153 aa2.32□□□□□ -2.04
CD44-235ENST00000532339 A0A096LNJ9 63 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 LOC102724200A0A096LPH7 203 aaPredicted RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 TMED7-TICAM2A0A0A6YYA0 188 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 C5orf49A4QMS7 147 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 OR11H12B2RN74 326 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 F5H5P2 479 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 LINC01619G3V211 115 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 NME4O00746 187 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 GABARAPO95166 117 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 HPRT1P00492 218 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 TLX1NBP0CAT3 122 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 IGHV1-8P0DP01 117 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 PMCHP20382 165 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 GDI2P50395 445 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 SERPINB8P50452 374 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 ZNF121P58317 390 aaPredicted RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 HERVK_113P61574 105 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 HAMPP81172 84 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 C1DQ13901 141 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 GINS1Q14691 196 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 FAM83EQ2M2I3 478 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 CDKL4Q5MAI5 379 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 ZNF678Q5SXM1 525 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 COMMD6Q7Z4G1 85 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 SLC35E3Q7Z769 313 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 MRPL55Q7Z7F7 128 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 LINC00596Q86U02 117 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 PCP2Q8IVA1 136 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 VKORC1L1Q8N0U8 176 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 Q8N402 240 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 COX18Q8N8Q8 333 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 OR52L1Q8NGH7 329 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 OR5K1Q8NHB7 308 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 MYOZ3Q8TDC0 251 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 LRRC29Q8WV35 223 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 SRSF12Q8WXF0 261 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 FAM104AQ969W3 186 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 ULBP2Q9BZM5 246 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 C11orf68Q9H3H3 251 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 RPP21Q9H633 154 aaKnown RBP2.31□□□□□ -2.04
CD44-235ENST00000532339 ZC4H2Q9NQZ6 224 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 MTFP1Q9UDX5 166 aa2.31□□□□□ -2.04
CD44-235ENST00000532339 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.3□□□□□ -2.04
CD44-235ENST00000532339 TRAV10A0A0B4J240 114 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 A0A1B0GVX0 72 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms