RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 FHL3Q13643 280 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 TNXAQ16473 311 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 PRSS8Q16651 343 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 SLC25A42Q86VD7 318 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 ANKRD13BQ86YJ7 626 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 OR5T1Q8NG75 326 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 CD300LFQ8TDQ1 290 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 MRPS26Q9BYN8 205 aaKnown RBP12.66□□□□□ -0.38
LSM1-205ENST00000523511 SLC5A7Q9GZV3 580 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 TAS2R8Q9NYW2 309 aa12.66□□□□□ -0.38
LSM1-205ENST00000523511 IGKV1D-13A0A0B4J2D9 117 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 SOX15O60248 233 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 OR2A4O95047 310 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 BRI3O95415 125 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 IGKV1-13P0DP09 117 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 S100GP29377 79 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 HOXD3P31249 432 aaPredicted RBP12.65□□□□□ -0.38
LSM1-205ENST00000523511 PJVKQ0ZLH3 352 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 GPR141Q7Z602 305 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 OR5H2Q8NGV7 314 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 OR6F1Q8NGZ6 308 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 C15orf40Q8WUR7 153 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 C5orf30Q96GV9 206 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 USMG5Q96IX5 58 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 RHOVQ96L33 236 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 OR2A7Q96R45 310 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 SCPEP1Q9HB40 452 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 RANGRFQ9HD47 186 aaPredicted RBP12.65□□□□□ -0.38
LSM1-205ENST00000523511 TPSG1Q9NRR2 321 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 EHFQ9NZC4 300 aa12.65□□□□□ -0.38
LSM1-205ENST00000523511 OVOL1O14753 267 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 ZNF182P17025 639 aaPredicted RBP12.64□□□□□ -0.39
LSM1-205ENST00000523511 MAS1LP35410 378 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 FXYD4P59646 89 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 TATDN3Q17R31 274 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 LPCAT3Q6P1A2 487 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 DHRS11Q6UWP2 260 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 ZNF429Q86V71 674 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 CMTM1Q8IZ96 169 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 CCL28Q9NRJ3 127 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 COA4Q9NYJ1 87 aa12.64□□□□□ -0.39
LSM1-205ENST00000523511 MEIS3P1A6NDR6 274 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 FAM25AB3EWG3 89 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 FAM25CB3EWG5 89 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 FAM25GB3EWG6 89 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 SULT1C2O00338 296 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 PLXNB1O43157 2135 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 IGLV2-14P01704 120 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 FCER2P06734 321 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 SAA1P0DJI8 122 aaPredicted RBP12.63□□□□□ -0.39
LSM1-205ENST00000523511 ZP3P21754 424 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 TSPAN5P62079 268 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 RPL30P62888 115 aaKnown RBP12.63□□□□□ -0.39
LSM1-205ENST00000523511 DYRK1AQ13627 763 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 OR2B11Q5JQS5 317 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 GPR107Q5VW38 600 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 SPAG16Q8N0X2 631 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 SRSF12Q8WXF0 261 aaKnown RBP12.63□□□□□ -0.39
LSM1-205ENST00000523511 SNAPC3Q92966 411 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 ELOVL1Q9BW60 279 aa12.63□□□□□ -0.39
LSM1-205ENST00000523511 DPPA5A6NC42 116 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 RBFOX2O43251 390 aaKnown RBP eCLIP12.62□□□□□ -0.39
LSM1-205ENST00000523511 GABARAPO95166 117 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 DHFRP00374 187 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 HPRT1P00492 218 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 IGHV3-11P01762 117 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 OR9G9P0C7N8 305 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 PTHLHP12272 177 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 NAT1P18440 290 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 KRTAP10-11P60412 298 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 FAM209BQ5JX69 171 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 IDO2Q6ZQW0 420 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 OR4A5Q8NH83 315 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 CASTOR1Q8WTX7 329 aa12.62□□□□□ -0.39
LSM1-205ENST00000523511 ZNF2Q9BSG1 426 aaPredicted RBP12.62□□□□□ -0.39
LSM1-205ENST00000523511 TINAGL1Q9GZM7 467 aaPredicted RBP12.62□□□□□ -0.39
LSM1-205ENST00000523511 ZNF430Q9H8G1 570 aaPredicted RBP12.62□□□□□ -0.39
LSM1-205ENST00000523511 NOTCH1P46531 2555 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 TNFSF12O43508 249 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 TPPPO94811 219 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 PMP2P02689 132 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 EIF4EP06730 217 aaKnown RBP12.61□□□□□ -0.39
LSM1-205ENST00000523511 RFX2P48378 723 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 TAS2R31P59538 309 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 TMEM17Q86X19 198 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 DCUN1D4Q92564 292 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 OR4C12Q96R67 309 aa12.61□□□□□ -0.39
LSM1-205ENST00000523511 HPGDSO60760 199 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 KBTBD11O94819 623 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 NQO2P16083 231 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 RCVRNP35243 200 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 ECI1P42126 302 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 EIF4EBP1Q13541 118 aaPredicted RBP12.6□□□□□ -0.39
LSM1-205ENST00000523511 AADACL3Q5VUY0 350 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 SNX29P2Q8IUI4 249 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 TMEM167AQ8TBQ9 72 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 GPX8Q8TED1 209 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 ALX4Q9H161 411 aaPredicted RBP12.6□□□□□ -0.39
LSM1-205ENST00000523511 HRASLSQ9HDD0 168 aa12.6□□□□□ -0.39
LSM1-205ENST00000523511 ADAM30Q9UKF2 790 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms