RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 SLC25A31Q9H0C2 315 aa12.99□□□□□ -0.33
NUP54-214ENST00000514307 ZNRD1Q9P1U0 126 aa12.99□□□□□ -0.33
NUP54-214ENST00000514307 USF3Q68DE3 2245 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 TRAV20A0A0B4J274 112 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 A0A0G2JRQ6 117 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 KANTRA0A1W2PQU2 76 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 TAAR5O14804 337 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 SYNGR2O43760 224 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 MSMBP08118 114 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 P0C879 139 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 RPL12P30050 165 aaKnown RBP12.98□□□□□ -0.33
NUP54-214ENST00000514307 REG1BP48304 166 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 AP2S1P53680 142 aaPredicted RBP12.98□□□□□ -0.33
NUP54-214ENST00000514307 TAS2R30P59541 319 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 LOXL1Q08397 574 aaPredicted RBP12.98□□□□□ -0.33
NUP54-214ENST00000514307 VSTM2AQ8TAG5 236 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 MALSU1Q96EH3 234 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 AQP10Q96PS8 301 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 CLCC1Q96S66 551 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 ARL6Q9H0F7 186 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 OR5AC2Q9NZP5 309 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 BOLA1Q9Y3E2 137 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 TBL2Q9Y4P3 447 aaKnown RBP12.98□□□□□ -0.33
NUP54-214ENST00000514307 NBPF19A0A087WUL8 3843 aa12.98□□□□□ -0.33
NUP54-214ENST00000514307 IGHV1-3A0A0C4DH29 117 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 TSC22D2O75157 780 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 POLR2GP62487 172 aaKnown RBP eCLIP12.97□□□□□ -0.33
NUP54-214ENST00000514307 MIDNQ504T8 468 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 LINC01356Q8N9X3 169 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 OR52E5Q8NH55 327 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 OR4A5Q8NH83 315 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 SMIM8Q96KF7 97 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 CIB3Q96Q77 187 aaPredicted RBP12.97□□□□□ -0.33
NUP54-214ENST00000514307 MS4A7Q9GZW8 240 aaPredicted RBP12.97□□□□□ -0.33
NUP54-214ENST00000514307 PRNDQ9UKY0 176 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 RCL1Q9Y2P8 373 aaKnown RBP12.97□□□□□ -0.33
NUP54-214ENST00000514307 MALRD1Q5VYJ5 2156 aa12.97□□□□□ -0.33
NUP54-214ENST00000514307 ODF3BA8MYP8 253 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 IFNA17P01571 189 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 CD1BP29016 333 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 SPCS3P61009 180 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 EIF5AP63241 154 aaKnown RBP12.96□□□□□ -0.33
NUP54-214ENST00000514307 RPP30P78346 268 aaKnown RBP12.96□□□□□ -0.33
NUP54-214ENST00000514307 IZUMO4Q1ZYL8 232 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 VMA21Q3ZAQ7 101 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 SSX9Q7RTT3 188 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 TSNAXQ99598 290 aaKnown RBP12.96□□□□□ -0.33
NUP54-214ENST00000514307 REG4Q9BYZ8 158 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 MAGT1Q9H0U3 335 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 PLSCR3Q9NRY6 295 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 TMEM140Q9NV12 185 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 HSPB7Q9UBY9 170 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 ITGB1BP2Q9UKP3 347 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 AUP1Q9Y679 476 aa12.96□□□□□ -0.33
NUP54-214ENST00000514307 LRBAP50851 2863 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 RNASEK-C17orf49H0YIS7 233 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 SSSCA1O60232 199 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 HKR1P10072 659 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 UBE2KP61086 200 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 TNFRSF9Q07011 255 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 DIAPH2-AS1Q14236 149 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 AARDQ4LEZ3 155 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 OR4A47Q6IF82 309 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 HCP5Q6MZN7 132 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 SLC51BQ86UW2 128 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 ZNF429Q86V71 674 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 OR2C3Q8N628 320 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 HARBI1Q96MB7 349 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 TBX15Q96SF7 602 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 ARPC5LQ9BPX5 153 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 BET1LQ9NYM9 111 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 WSB1Q9Y6I7 421 aa12.95□□□□□ -0.34
NUP54-214ENST00000514307 HRNRQ86YZ3 2850 aaPredicted RBP12.95□□□□□ -0.34
NUP54-214ENST00000514307 CEBPZOSA8MTT3 80 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 J3QLI3 93 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 UPK2O00526 184 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 KBTBD11O94819 623 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 SCAF4O95104 1147 aaKnown RBP12.94□□□□□ -0.34
NUP54-214ENST00000514307 IGKV1-16P04430 117 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 IL6RP08887 468 aaPredicted RBP12.94□□□□□ -0.34
NUP54-214ENST00000514307 HOXB4P17483 251 aaPredicted RBP12.94□□□□□ -0.34
NUP54-214ENST00000514307 DLX1P56177 255 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 HSPE1P61604 102 aaKnown RBP12.94□□□□□ -0.34
NUP54-214ENST00000514307 RELBQ01201 579 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 Q5PR19 223 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 TEX45Q8NA69 505 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 HIPK2Q9H2X6 1198 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 C7orf69Q9H7B7 122 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 PSENENQ9NZ42 101 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 NUP50Q9UKX7 468 aa12.94□□□□□ -0.34
NUP54-214ENST00000514307 RNF222A6NCQ9 220 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 BCL2L11O43521 198 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 FGF2P09038 288 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 BRS3P32247 399 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 CAV2P51636 162 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 KLRD1Q13241 179 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 VKORC1L1Q8N0U8 176 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 OR8H1Q8NGG4 311 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 RBKSQ9H477 322 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 ENY2Q9NPA8 101 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms