RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PLSCR2Q9NRY7 297 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 FZR1Q9UM11 496 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 ATP5LO75964 103 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 TNFRSF6BO95407 300 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 PSG1P11464 419 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 CA7P43166 264 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM50BP56557 158 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 FUT5Q11128 374 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 SPRED2Q7Z698 418 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 MS4A5Q9H3V2 200 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 LPAR2Q9HBW0 351 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 COA4Q9NYJ1 87 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 SCN4AP35499 1836 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 PARP14Q460N5 1801 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 A0A0G2JLM5 398 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HOXA3O43365 443 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BKO60814 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BJP06899 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BOP23527 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BBP33778 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BDP58876 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BCP62807 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST2H2BEQ16778 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 VAX1Q5SQQ9 334 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 OR5AN1Q8NGI8 311 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 MRAPQ8TCY5 172 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 CT55Q8WUE5 264 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BHQ93079 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 MRGPRFQ96AM1 343 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BNQ99877 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H2BMQ99879 126 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 CST9LQ9H4G1 147 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 NPVFQ9HCQ7 196 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 SERGEFQ9UGK8 458 aa7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 AMMECR1Q9Y4X0 333 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-218ENST00000513024 A0A1W2PQM1 296 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ZNF883P0CG24 379 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 FOXA3P55318 350 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 PMVKQ15126 192 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM177Q53S58 311 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM170AQ8WVE7 144 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 TSPAN2O60636 221 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 SERF1AO75920 110 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 DCAF10Q5QP82 559 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 SLC25A30Q5SVS4 291 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM170BQ5T4T1 132 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 SPSB4Q96A44 273 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ONECUT1Q9UBC0 465 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 HLA-DQB1P01920 261 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 Q5BKY6 102 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 LILRA6Q6PI73 481 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ZAR1Q86SH2 424 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 FAM19A2Q8N3H0 131 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 MRGPRX3Q96LB0 322 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 KLK15Q9H2R5 256 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 SPANXCQ9NY87 97 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 PXMP4Q9Y6I8 212 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 RRHO14718 337 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 UCP3P55916 312 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ZNF658BQ4V348 819 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ZNF585BQ52M93 769 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 CYP2G1PQ6ZSU1 146 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ABHD14BQ96IU4 210 aa7.54□□□□□ -1.2
LIMCH1-218ENST00000513024 ABCA1O95477 2261 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 TRAV9-1A0A075B6T8 112 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 IGHV1OR21-1A0A087WYE8 117 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 GHRHP01286 108 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 NANOS3P60323 173 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 RPS20P60866 119 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM155Q4W5P6 130 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 CFAP161Q6P656 301 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 CEP250Q9BV73 2442 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 ZNF815PA8K554 130 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 ADRA2AP08913 450 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 TAF15Q92804 592 aaKnown RBP eCLIP7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 NABP2Q9BQ15 211 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 KIR3DL2P43630 455 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 C2orf68Q2NKX9 166 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST3H2BBQ8N257 126 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 OR1L8Q8NGR8 309 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 FAM222BQ8WU58 562 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 hADV38S2A0JD32 116 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 IGHV4-39P01824 125 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 TDGF1P3P51864 188 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 HIST1H4AP62805 103 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 RASL11BQ9BPW5 248 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 KLK13Q9UKR3 277 aa7.53□□□□□ -1.2
LIMCH1-218ENST00000513024 IGHV5-51A0A0C4DH38 117 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 C16orf97H3BN30 126 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 GZMMP51124 257 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 H2BFSP57053 126 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 PSG6Q00889 435 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 MBNL2Q5VZF2 373 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 FAM53AQ6NSI3 398 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 C18orf15Q96N68 181 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 IMMP2LQ96T52 175 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 ST6GALNAC2Q9UJ37 374 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 PRNDQ9UKY0 176 aa7.52□□□□□ -1.21
LIMCH1-218ENST00000513024 TRAV12-3A0A0B4J271 114 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms